View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_283 (Length: 245)
Name: NF8208A_low_283
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_283 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 15935853 - 15935689
Alignment:
| Q |
45 |
atatctcgtctccccgacgatgaattatacgagctcctcggcaaaaagctttcgaacctcaacgaaggcgaagcagatcgcatcctcgaagcggagttac |
144 |
Q |
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| T |
15935853 |
atatctcgtctctccgacgatgaattatacgagctcctcggcaaaaagctttctaacctccccgaaggcgaagcagatcgcatcctcgaagcggagttac |
15935754 |
T |
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| Q |
145 |
aaaccatgttcgctcctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15935753 |
aaaccatgttcgctcctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
15935689 |
T |
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