View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_284 (Length: 244)
Name: NF8208A_low_284
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_284 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38567082 - 38566857
Alignment:
| Q |
1 |
ggacagagtggtagtggaaagtcgacaagtatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
100 |
Q |
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| T |
38567082 |
ggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
38566983 |
T |
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| Q |
101 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaaga |
200 |
Q |
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| T |
38566982 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaaga |
38566883 |
T |
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| Q |
201 |
tggagcaacgattgaagaaataagat |
226 |
Q |
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| T |
38566882 |
tggagcaacgattgaagagataagat |
38566857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38525957 - 38525732
Alignment:
| Q |
1 |
ggacagagtggtagtggaaagtcgacaagtatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
100 |
Q |
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| T |
38525957 |
ggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaacatgaaag |
38525858 |
T |
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| Q |
101 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaaga |
200 |
Q |
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| T |
38525857 |
aacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatatggtaaaga |
38525758 |
T |
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| Q |
201 |
tggagcaacgattgaagaaataagat |
226 |
Q |
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| T |
38525757 |
tggagcaacaattgaagaaataagat |
38525732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 51199484 - 51199554
Alignment:
| Q |
7 |
agtggtagtggaaagtcgacaagtatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
77 |
Q |
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| T |
51199484 |
agtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttct |
51199554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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