View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_287 (Length: 244)

Name: NF8208A_low_287
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_287
NF8208A_low_287
[»] chr6 (3 HSPs)
chr6 (21-244)||(30498685-30498908)
chr6 (35-110)||(17461229-17461304)
chr6 (21-112)||(14813064-14813155)
[»] chr7 (2 HSPs)
chr7 (21-112)||(14579984-14580075)
chr7 (21-112)||(15996987-15997078)
[»] chr1 (2 HSPs)
chr1 (21-112)||(2357996-2358087)
chr1 (22-110)||(52775950-52776038)
[»] chr4 (4 HSPs)
chr4 (21-112)||(10636388-10636479)
chr4 (21-112)||(5237606-5237697)
chr4 (21-111)||(23169377-23169467)
chr4 (22-110)||(22178864-22178952)
[»] chr2 (2 HSPs)
chr2 (21-112)||(8309710-8309801)
chr2 (22-110)||(29497727-29497815)
[»] chr8 (1 HSPs)
chr8 (22-112)||(187989-188079)
[»] chr5 (1 HSPs)
chr5 (34-112)||(9280203-9280281)
[»] scaffold0329 (1 HSPs)
scaffold0329 (22-110)||(9279-9367)
[»] chr3 (1 HSPs)
chr3 (22-110)||(19588633-19588721)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 30498685 - 30498908
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagcgagggtgc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30498685 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagctagggtgc 30498784  T
Q  121 actctgattctcaaaatataaaataggtaacttgatacactaaacttgcaagtcttcaattaagtataagagccattgaagttcataggtgtcagcaact 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30498785 actctgattctcaaaatataaaattggtaacttgatacactaaacttgcaagtctttaattaagtataagagccattgaagttcataggtgtcagcaact 30498884  T
Q  221 aaagcacaatatcctgcttcagag 244  Q
    ||||||||||||| || |||||||    
T  30498885 aaagcacaatatcatggttcagag 30498908  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 17461229 - 17461304
Alignment:
Q  35 ttactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||||||||||| ||||| || |||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  17461229 ttactcccaaactcaatggttccaattacatctcttggagtcgcaccgttgaacgctcattgggaacggagaacaa 17461304  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 14813064 - 14813155
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||| || || |||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| |||||||||||||||||||    
T  14813064 caattctctttccattactcctaaattcaacggttccaattatatcgcttggagtcgcactgttgaacgctcgttgggaacgaagaacaagc 14813155  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 14579984 - 14580075
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || |||||| | ||||||||||||||||||||||    
T  14579984 caattcactctctattactcccaaactcaacggttccaattacattgcttggagtagaactgttgaatgatcattgggaacgaagaacaagc 14580075  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 15996987 - 15997078
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || |||||||| || |||||||||||||||||||    
T  15996987 caattcactctctattactcccaaactcaacggttccaattacattgcttggagtagaactgttgaacgatctttgggaacgaagaacaagc 15997078  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 2357996 - 2358087
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||| || || |||||||||||| |||||||||| || || || |||||||||||||||||||||||||| |||||||||||||||||||    
T  2357996 caattctctttccattactcccaaattcaacggttccaattatatcgcttggagtcgcaccgttgaacgctcgttgggaacgaagaacaagc 2358087  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 52775950 - 52776038
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||||||||||||||||    
T  52775950 aattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattgggaacgaagaacaa 52776038  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 10636388 - 10636479
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||| || ||||||||||| ||| |||||||||| || || ||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  10636388 caattctctttctattactcctaaattcaacggttccaattatattgcttggagtcgcactgttgaacgctcgttgggaacgaagaataagc 10636479  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 5237606 - 5237697
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||| || || |||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| |||||||||||||||||||    
T  5237606 caattctctttccattactcctaaattcaacggttccaattatatcgcttggagtcgcactgttgaacgctcgttgggaacgaagaacaagc 5237697  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 23169467 - 23169377
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaag 111  Q
    |||||| ||||| ||||||||||||||||  ||||| || ||||| ||||||||||| || |||||||| || ||||||||||||||||||    
T  23169467 caattctctctccattactcccaaactcactggttccaattacatagcttggagtcgtacggttgaacgttcgttgggaacgaagaacaag 23169377  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 22178952 - 22178864
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||||||||||||||||    
T  22178952 aattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattgggaacgaagaacaa 22178864  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 8309710 - 8309801
Alignment:
Q  21 caattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||| | || || ||||||||||| ||||    
T  8309710 caattcactctccattactcccaaactcaacggttccaactacatttcttggagtcacactgttgaatgttctttaggaacgaagaataagc 8309801  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 29497727 - 29497815
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||| ||||| ||| | ||||||| |||||| ||||||||||||| || ||||||  || |||| || |||||||||||||||||    
T  29497727 aattcactttctatcactactaaactcatcggttcgaactacattgcttagaatcgcactattcaacgttcgttgggaacgaagaacaa 29497815  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 187989 - 188079
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    ||||| || ||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| ||||    
T  187989 aattctctttctattactcctaaactcaacgattccaactatattgcttggagtcgcactgttgaacgttctttgggaacgaagaataagc 188079  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 9280203 - 9280281
Alignment:
Q  34 attactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 112  Q
    ||||||||||||||||||||||| || ||||||||||||| ||| || |||  | | || |||||||||||||||||||    
T  9280203 attactcccaaactcaacggttccaattacattgcttggaatcgtactgttagaagttctttgggaacgaagaacaagc 9280281  T

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Target: scaffold0329 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 9279 - 9367
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||||||||||||||||    
T  9279 aattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattgggaacgaagaacaa 9367  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 19588721 - 19588633
Alignment:
Q  22 aattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 110  Q
    |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||||||||||||||||    
T  19588721 aattcactttctattactcctaagcttactggttctaattatattgcatggaatcgaacggttcaacgttcattgggaacgaagaacaa 19588633  T

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