View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_291 (Length: 243)

Name: NF8208A_low_291
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_291
NF8208A_low_291
[»] chr3 (14 HSPs)
chr3 (2-224)||(18723240-18723462)
chr3 (1-213)||(27343966-27344178)
chr3 (64-224)||(27370480-27370640)
chr3 (70-208)||(26116994-26117132)
chr3 (107-208)||(26212051-26212152)
chr3 (1-72)||(27370264-27370335)
chr3 (15-72)||(26117283-26117340)
chr3 (107-208)||(26239258-26239359)
chr3 (70-202)||(18080989-18081121)
chr3 (15-69)||(26145290-26145344)
chr3 (15-72)||(26239547-26239604)
chr3 (70-208)||(26144998-26145136)
chr3 (107-208)||(26183444-26183545)
chr3 (15-64)||(27401408-27401457)
[»] scaffold1344 (1 HSPs)
scaffold1344 (5-213)||(657-865)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-213)||(73075-73287)
[»] scaffold0854 (2 HSPs)
scaffold0854 (64-224)||(4139-4299)
scaffold0854 (7-72)||(4444-4509)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 18723462 - 18723240
Alignment:
Q  2 aattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaatctaaagaaagtgaccttaagatcatgtt 101  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  18723462 aattgtgatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgtcttctccaatctaaagaatgtgaccttaagatcatgtt 18723363  T
Q  102 ctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataattac 201  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  18723362 ctatgttggtttctgtttttgatttgtcaacttctcgaggcctgctgctgttggaggaattgataatatttaattgtgagaaattggaaagcataattac 18723263  T
Q  202 aattgaatgtgaagaaatagttg 224  Q
    |||||||||||||||||||||||    
T  18723262 aattgaatgtgaagaaatagttg 18723240  T

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Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 27343966 - 27344178
Alignment:
Q  1 aaattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaatctaaagaaagtgaccttaagatcatgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  27343966 aaattgtcatcaaatacagtgcctggtagacactaaacatataaaatctaaagtaccaagtgtcttctccaatcttaagaacgtgaccttaagatcatgt 27344065  T
Q  101 tctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataatta 200  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||    
T  27344066 tctatgttggtttctgtttttgatctgtcaacttctagaggcctgctgctattggagaaattggaaataattgattgcgagaaattggaaaacataatta 27344165  T
Q  201 caattgaatgtga 213  Q
    ||| ||| |||||    
T  27344166 caactgattgtga 27344178  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 27370480 - 27370640
Alignment:
Q  64 tttctccaatctaaagaaagtgaccttaagatcatgttctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattg 163  Q
    ||||| |||||||||||| |||||| ||   |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27370480 tttctgcaatctaaagaacgtgaccatatattcatgtcctatgctggtttctgtttttgatctgtcaacttctcgaggcctgccgctgttggagaaattg 27370579  T
Q  164 gaaatatttaattgtgagaaattggaaagcataattacaattgaatgtgaagaaatagttg 224  Q
       |||  | |||||||| | ||||||| ||||||||||| ||||||||||||||||||||    
T  27370580 cgcatagatgattgtgagcagttggaaaacataattacaactgaatgtgaagaaatagttg 27370640  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 26117132 - 26116994
Alignment:
Q  70 caatctaaagaaagtgaccttaagatcatgttctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaata 169  Q
    |||||||||||  |||||  ||| |||||| || |  ||||||||||||||||| ||||| ||||||| | || ||| ||| |||||| |||||||||||    
T  26117132 caatctaaagaccgtgacactaatatcatgctcaagattggtttctgtttttgaactgtccacttctcaaagcttgccgctgttggaggaattggaaata 26117033  T
Q  170 tttaattgtgagaaattggaaagcataattacaattgaa 208  Q
     || |||||||||||||||||| |||||| |||||||||    
T  26117032 attgattgtgagaaattggaaaacataatcacaattgaa 26116994  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 26212152 - 26212051
Alignment:
Q  107 ttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataattacaattg 206  Q
    ||||||||||||||||| || |||||||||| | || ||| ||| |||||||||||| ||||| |||||||| |||||||||||| ||||||| || |||    
T  26212152 ttggtttctgtttttgaactatcaacttctcaaagcttgccgctgttggagaaattgaaaatagttaattgtaagaaattggaaaacataattgcatttg 26212053  T
Q  207 aa 208  Q
    ||    
T  26212052 aa 26212051  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27370264 - 27370335
Alignment:
Q  1 aaattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaa 72  Q
    |||||||||||||||||| |||||||||||||| |||||||  |||||| ||||||||||||| ||||||||    
T  27370264 aaattgtcatcaagtacaatgcctggtagacacgaaacataataattctgaagtaccaagtgtcttctccaa 27370335  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26117340 - 26117283
Alignment:
Q  15 tacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaa 72  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  26117340 tacagtgccttgtagacactaaacatattaattctcaagtaccaattgttttctccaa 26117283  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 26239359 - 26239258
Alignment:
Q  107 ttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataattacaattg 206  Q
    ||||||||||||||||| || |||||||||| | || ||| ||| |||||| ||||| ||||| |||||||| |||||||||||| ||||||| || |||    
T  26239359 ttggtttctgtttttgaactatcaacttctcaaagcttgccgctgttggaggaattgaaaatagttaattgtaagaaattggaaaacataattgcatttg 26239260  T
Q  207 aa 208  Q
    ||    
T  26239259 aa 26239258  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 18081121 - 18080989
Alignment:
Q  70 caatctaaagaaagtgaccttaagatcatgttctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaata 169  Q
    |||||| |||||  ||||| ||| ||||||| | |  ||||||||||||||||| |||||||| |||||| |||||||||| |||||||  |||||||||    
T  18081121 caatctgaagaacatgaccctaaaatcatgtccaacgttggtttctgtttttgacctgtcaacatctcgaagcctgctgctgttggagagcttggaaata 18081022  T
Q  170 tttaattgtgagaaattggaaagcataattaca 202  Q
     || ||||  | | |||||||| ||||||||||    
T  18081021 attgattgcaaaatattggaaaacataattaca 18080989  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 26145344 - 26145290
Alignment:
Q  15 tacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctc 69  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  26145344 tacagtgcctagtagacactaaacatattaattctcaagtaccaattgttttctc 26145290  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26239604 - 26239547
Alignment:
Q  15 tacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaa 72  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  26239604 tacagtaccttgtagacactaaacatattaattctcaagtaccaattgttttctccaa 26239547  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 26145136 - 26144998
Alignment:
Q  70 caatctaaagaaagtgaccttaagatcatgttctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaata 169  Q
    |||||||||||  ||||  |||| |||||| || |  |||||||||||||||||  |||| ||||||| | || | |  || |||||||||||| |||||    
T  26145136 caatctaaagactgtgaaattaaaatcatgctcaagattggtttctgtttttgaaatgtccacttctcaaagctttccactgttggagaaattgaaaata 26145037  T
Q  170 tttaattgtgagaaattggaaagcataattacaattgaa 208  Q
     || |||||||||||||||||| |||||| ||| |||||    
T  26145036 attgattgtgagaaattggaaaacataatcacatttgaa 26144998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 26183545 - 26183444
Alignment:
Q  107 ttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataattacaattg 206  Q
    ||||||||||||||| | ||||||||||||| | || |||  || |||||| ||||| | ||| || |||||||||||||||||| |||||| ||| |||    
T  26183545 ttggtttctgtttttaaactgtcaacttctcaaagcttgccactgttggaggaattgaatatagttgattgtgagaaattggaaaacataatcacatttg 26183446  T
Q  207 aa 208  Q
    ||    
T  26183445 aa 26183444  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 27401457 - 27401408
Alignment:
Q  15 tacagtgcctggtagacactaaacatataaattctcaagtaccaagtgtt 64  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||| ||||    
T  27401457 tacagtgcctcatagacactaaacatattgattctcaagtaccaaatgtt 27401408  T

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Target: scaffold1344 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 657 - 865
Alignment:
Q  5 tgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaatctaaagaaagtgaccttaagatcatgttcta 104  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||  ||||||||||    
T  657 tgtcatcaagtacagtgccttttagacactaaacatataaattctgaagtaccaagtgtcttctccaatctaaagaaggtgactttaatttcatgttcta 756  T
Q  105 tcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataattacaat 204  Q
    | ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| || |||| ||||||||||||| |||||||||||     
T  757 tgttggtttctgtttttgatctgtcaactgctagaggactgctgctattggagaaattgaaaataattgattgcgagaaattggaaaacataattacaac 856  T
Q  205 tgaatgtga 213  Q
    ||| |||||    
T  857 tgattgtga 865  T

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Target: scaffold0043 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 73287 - 73075
Alignment:
Q  1 aaattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaatctaaagaaagtgaccttaagatcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||| |||   ||||||    
T  73287 aaattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgtcttctccaatctaaaaaccgtgactttagattcatgt 73188  T
Q  101 tctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattggaaatatttaattgtgagaaattggaaagcataatta 200  Q
    ||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||| ||||  |||||||||||| ||||||||    
T  73187 tctatgttggtttctatttttgatatgtcaacttctagaggcctgctgctattggagacattgaaaatatttcattgcaagaaattggaaaacataatta 73088  T
Q  201 caattgaatgtga 213  Q
    ||| ||| |||||    
T  73087 caactgattgtga 73075  T

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Target: scaffold0854 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 4299 - 4139
Alignment:
Q  64 tttctccaatctaaagaaagtgaccttaagatcatgttctatcttggtttctgtttttgatctgtcaacttctcgaggcctgctgctattggagaaattg 163  Q
    ||||| |||||||||||| |||||||||   ||||||| ||| |||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||    
T  4299 tttctgcaatctaaagaacgtgaccttatattcatgttgtatgttggtttctgtttttgatatgtcaacttctcgaggcttgccgctgttggagaaattg 4200  T
Q  164 gaaatatttaattgtgagaaattggaaagcataattacaattgaatgtgaagaaatagttg 224  Q
    || |||| | |||||||| | ||||||| ||||||||||| ||||||||||||||||||||    
T  4199 gacatatatgattgtgagcagttggaaaacataattacaactgaatgtgaagaaatagttg 4139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 4509 - 4444
Alignment:
Q  7 tcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgttttctccaa 72  Q
    |||||||||||||| |||||||||||| |||||||  |||||| ||||||||||||| ||||||||    
T  4509 tcatcaagtacagtacctggtagacacgaaacataataattctgaagtaccaagtgtcttctccaa 4444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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