View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_295 (Length: 243)
Name: NF8208A_low_295
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_295 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 35933319 - 35933546
Alignment:
| Q |
1 |
catctccaataatatgtgacaagaacataagtgcctctgtcaagttatctgtaattaagggaggaaagtaagtaataaattcaaggacctatcttcaaat |
100 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
35933319 |
catctccaacaaaatgtgacaagaacataagtgcctctgtcaagttatctgtaattaagggaggaaagt----aataaatttaaggacctatcttcaaat |
35933414 |
T |
|
| Q |
101 |
aaaacaagcaaattaagaatttaattcgtaaatgcttacattttaattcagatgaagcatcggcgttagctaattttaattgcattgtataattgtatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35933415 |
aaaacaagcaaattaagaatttaattcgtaaatgcttacattttaattcagatgaagcatcggcgttagctaattttaattgcattgtataattgtatat |
35933514 |
T |
|
| Q |
201 |
tgctccagtaacgcatctatgctgatgtccat |
232 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
35933515 |
tgctccagtaacgcatctatgcttatgtccat |
35933546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University