View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_299 (Length: 243)
Name: NF8208A_low_299
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_299 |
 | |
|
| [»] scaffold0557 (3 HSPs) |
| | |
|
| [»] scaffold0442 (3 HSPs) |
| | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 41336395 - 41336605
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336395 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
41336494 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336495 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
41336594 |
T |
|
| Q |
218 |
cctcaatgatg |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
41336595 |
cctcaatgatg |
41336605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 20903237 - 20903447
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20903237 |
gaacaacatgagtactatgattccaaatcagggtgttaatcaaagcatgcaacatcaaatctacaccggaagtgttcaacagaacaagaacaccatcatg |
20903336 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20903337 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
20903436 |
T |
|
| Q |
218 |
cctcaatgatg |
228 |
Q |
| |
|
| |||||||| |
|
|
| T |
20903437 |
ctacaatgatg |
20903447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 20921843 - 20922047
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20921843 |
gaacaacatgagtactatgattccaaatcacggtatcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
20921942 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
217 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20921943 |
agtactatggttccaactcctagtgt------aaacttgcatcctcaggtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaata |
20922036 |
T |
|
| Q |
218 |
cctcaatgatg |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
20922037 |
cctcaatgatg |
20922047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 21005953 - 21006163
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21005953 |
gaacaacatgagtactatgattccaaatcacaatgtcaatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaacaccatcatg |
21006052 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaata |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
21006053 |
agtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaata |
21006152 |
T |
|
| Q |
218 |
cctcaatgatg |
228 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
21006153 |
cttcattgatg |
21006163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 21005841 - 21005944
Alignment:
| Q |
50 |
gtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag---aacaccatcatgagtactatggttccaactcctggtgttaa |
146 |
Q |
| |
|
|||| ||||||| |||||| | |||||||||| || |||||||||||| |||||| |||||| ||| |||||| ||| ||||| |||||||||| | |
|
|
| T |
21005841 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttga |
21005940 |
T |
|
| Q |
147 |
tcaa |
150 |
Q |
| |
|
|||| |
|
|
| T |
21005941 |
tcaa |
21005944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 5976 - 5760
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
5976 |
gaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatg |
5877 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgca---tc---ctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatga |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5876 |
agtactatggttccaactcctagtgttaatcaaaacatgcacattcagtttcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatga |
5777 |
T |
|
| Q |
212 |
tgaatacctcaatgatg |
228 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
5776 |
tgaatacttcaacgatg |
5760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 5076 - 5292
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||| ||| |||||||| | |||||||||||| || ||||||||||||| ||||||||||||||| || |
|
|
| T |
5076 |
gaacaacatgaatactatgattctaaatcacagtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaacaccatcgtg |
5175 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttgca------tcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatga |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5176 |
agtactatggttccaactccaagtgttaatgaaaacatgcacgtgctgtctcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatga |
5275 |
T |
|
| Q |
212 |
tgaatacctcaatgatg |
228 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
5276 |
tgaatacttcaatgatg |
5292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 6043 - 5899
Alignment:
| Q |
38 |
ttccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatggttccaactcc |
137 |
Q |
| |
|
|||||| ||| ||||| ||||||| |||||| | |||||||||| || ||||||||||||| | ||||| || ||||||||||||| |||||| | |
|
|
| T |
6043 |
ttccaactcatggtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaa---caacatgagtactatgattccaaatta |
5947 |
T |
|
| Q |
138 |
tggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttca |
185 |
Q |
| |
|
||||||||||||| | |||| | |||| ||||| || ||||||||| |
|
|
| T |
5946 |
cggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 9370 - 9154
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
9370 |
gaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatg |
9271 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaaacttg--catcc----tcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatga |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9270 |
agtactatggttccaactcctagtgttaatcaaaacatgcacatgcagtttcaagtctacacttcaagtgttaatcaagaacagaagagcaacaccatga |
9171 |
T |
|
| Q |
212 |
tgaatacctcaatgatg |
228 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
9170 |
tgaatacttcaacgatg |
9154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 8441 - 8657
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| ||| |||||||||| ||||||||| || || ||||||||||||| |||||||||||||| || |
|
|
| T |
8441 |
gaacaacatgaatactatgattctaaatcacggtgttaattaaagcatgcaacgtcaaatcaaccctagaagtgttcaacaaaacaagaacaccattgtg |
8540 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaa------acttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatga |
211 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||| || |||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
8541 |
agtactatggttcaaactcctagtgtaaatcaaaacatgcacatgcagtctcaagtctacacctcaagtgttaatcaacaacaaaagagcaaaaccatga |
8640 |
T |
|
| Q |
212 |
tgaatacctcaatgatg |
228 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
8641 |
tgaatacttcaacgatg |
8657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 9428 - 9293
Alignment:
| Q |
47 |
acggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatggttccaactcctggtgttaa |
146 |
Q |
| |
|
||||||| ||||||| |||||| | |||||||||| || ||||||||||||| | ||||| || ||||||||||||| |||||| | |||||||| |
|
|
| T |
9428 |
acggtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaa---caacatgagtactatgattccaaattacggtgttaa |
9332 |
T |
|
| Q |
147 |
tcaaaacttgcatcctcaagtctacacttcaagtgttca |
185 |
Q |
| |
|
||||| | |||| | |||| ||||| || ||||||||| |
|
|
| T |
9331 |
tcaaagcatgcaacttcaaatctaccctggaagtgttca |
9293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 46929 - 47145
Alignment:
| Q |
18 |
gaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
46929 |
gaacaacatgagtaccatgattccaaatcacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaacatcatcgtg |
47028 |
T |
|
| Q |
118 |
agtactatggttccaactcctggtgttaatcaaa------acttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatga |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||| |||||||||||||||||||| || ||||||||||||| || |||||||||| |
|
|
| T |
47029 |
agtactatggttccaactcctagtgttaatcaaaacatgcacatgcagtctcaagtctacacttcaagttttaatcaacaacagaacagtaacaccatga |
47128 |
T |
|
| Q |
212 |
tgaatacctcaatgatg |
228 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
47129 |
tgaatacttcaacgatg |
47145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 48039 - 47872
Alignment:
| Q |
70 |
cgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatggttccaactcctggtgttaatcaaaactt---------gcatc |
160 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
48039 |
cgtcaaatctagcttgtaagtgttcaacaaaacaagaacaccatcgtgagtattatggttccaactcctagtgttaatcaaaacatgcacatgcagcagt |
47940 |
T |
|
| Q |
161 |
ctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaatacctcaatgatg |
228 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
47939 |
ctcaagtctacgcttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaacgatg |
47872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University