View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_3 (Length: 577)
Name: NF8208A_low_3
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 41 - 572
Target Start/End: Complemental strand, 8848265 - 8847730
Alignment:
| Q |
41 |
attagagcacccacattcatcatacctatatgaattctttaaatagatcacactgaattttatatattatttcacattttccaaatatttaagctactca |
140 |
Q |
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| T |
8848265 |
attagagcacccacattcatcatacctatatggattctttaaatagatcacatttaattttatatattatttcacattttccaaatatttaaacaactca |
8848166 |
T |
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| Q |
141 |
actacatattaaagtatccatattgcccatcaaaaactctaaaatatatcacattcattatatcccacgttattgcaaaagaaatattatacatgtcttt |
240 |
Q |
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| T |
8848165 |
actacatattaaaatatccatattacccatcaaaaactctaaaatagatcacatccattatatcccacgttattgcaaaagaaatattatacatgtcttt |
8848066 |
T |
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| Q |
241 |
atttgtacaagtacatgatataatattgaagaaaaaattgcatgccataaagtaattagaaacctattgagaaaaatctaagtcccaaatcggatagata |
340 |
Q |
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| T |
8848065 |
atttgtacaagtacataatataatattgaagaaaaaattgcatgccataaagtaattagaaacctattgagaaaaatctaagtcccacatcagatagata |
8847966 |
T |
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| Q |
341 |
caagagtcttatatatctgatgtgagactcttaacaaaaccatttatgtgtatacacacaatcgaaactaaagat----acgtatggatgaattattcaa |
436 |
Q |
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| T |
8847965 |
caagagtcttatcaatctgatgtgagactcttaacagaaccgtttatgtgtatacacacaatcgaaactaaagatgatcacgtatggatgaattattcaa |
8847866 |
T |
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| Q |
437 |
ttgacactgacgcataatgtttagtttccgtgaagtaactcaaaataaacacagacaataatgctcataagaaactagatatatgaattttcacgtctgt |
536 |
Q |
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| T |
8847865 |
ttgacattgacgcatgatgtttagtttccgtgaagtaactcaaaataaacacagacaataatgctcttaagaaactagatatatgaattttcacgtctgt |
8847766 |
T |
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| Q |
537 |
atgttgctcaaattgtggcaagaacttttcaatcat |
572 |
Q |
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| T |
8847765 |
atgttgctcaaattgtggcgagaacttttcaatcat |
8847730 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 14657578 - 14657534
Alignment:
| Q |
103 |
tatattatttcacattttccaaatatttaagctactcaactacat |
147 |
Q |
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| T |
14657578 |
tatattatttcacactttccaattatttaaaccactcaactacat |
14657534 |
T |
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