View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_305 (Length: 242)

Name: NF8208A_low_305
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_305
NF8208A_low_305
[»] chr3 (3 HSPs)
chr3 (53-242)||(32368336-32368525)
chr3 (8-98)||(32368534-32368625)
chr3 (130-207)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (8-218)||(26076348-26076559)
chr4 (130-207)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (103-225)||(12370874-12370994)
chr2 (145-242)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (95-242)||(5243245-5243396)
chr7 (172-242)||(35898170-35898240)
chr7 (145-224)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (8-176)||(4958422-4958591)
chr1 (130-225)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (172-225)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (172-225)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (112-212)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 53 - 242
Target Start/End: Complemental strand, 32368525 - 32368336
Alignment:
Q  53 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 152  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  153 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 242  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || |||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga 32368336  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 32368625 - 32368534
Alignment:
Q  8 catctcgctgcagctaaaagaatactgagaaatgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 98  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368625 catctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  130 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 207  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 26076348 - 26076559
Alignment:
Q  8 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 106  Q
    |||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  |||    
T  26076348 catctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattag 26076447  T
Q  107 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcac 206  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||||     
T  26076448 agggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtgcaa 26076547  T
Q  207 taagaaacaacc 218  Q
     |||||||||||    
T  26076548 aaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  130 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 207  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 12370874 - 12370994
Alignment:
Q  103 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggt 202  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || ||||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggt 12370971  T
Q  203 gcactaagaaacaaccagtcact 225  Q
    |||| ||||||||||||||||||    
T  12370972 gcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 3461271 - 3461368
Alignment:
Q  145 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 242  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 3461368  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 5243245 - 5243396
Alignment:
Q  95 aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggcta----cctattcaaattaaatgatgatg 190  Q
    ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||| ||    | ||||||| || ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatg 5243344  T
Q  191 caatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 242  Q
    ||||||||||||| |||||||| |||||||||| | || |||||||||||||    
T  5243345 caatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtga 5243396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 35898170 - 35898240
Alignment:
Q  172 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 242  Q
    |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 35898240  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  145 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 224  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 4958591 - 4958422
Alignment:
Q  8 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 106  Q
    |||||| ||||||| ||||| ||| ||||| |||||||||| ||  |||||||||||||| | || ||| || | |||||  || |||| ||| | ||||    
T  4958591 catctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactag 4958492  T
Q  107 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 176  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||| | | |||||||||||||    
T  4958491 agggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  130 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 225  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  172 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 225  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  172 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 225  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  112 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 211  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  212 a 212  Q
    |    
T  1183107 a 1183107  T

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