View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_306 (Length: 242)
Name: NF8208A_low_306
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_306 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 39244002 - 39243803
Alignment:
| Q |
23 |
cgtatcacctctagaaataataaattaactttgtatgtacttcnnnnnnnnn---gttaacttttgatgttggatccctacacagtttaaattacattac |
119 |
Q |
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| T |
39244002 |
cgtatcacctctagaaataataaattaactttgtatgtactccttttttttttttgttaacttttgatgttggatccctacacagtttaaattacattac |
39243903 |
T |
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| Q |
120 |
ttttccctcgtcaactatttttaattaatcacgttttgagttcactcaatgtttattttttcaacgacaggtcactcatggttgatcttgtggtatctgt |
219 |
Q |
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|||| ||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243902 |
tttttccttgtcaactatttttaattaatcacg-tttgaggtcgctcaatgtttattttttcaacgacaggtcactcatggttgatcttgtggtatctgt |
39243804 |
T |
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