View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_308 (Length: 242)
Name: NF8208A_low_308
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_308 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 2540725 - 2540529
Alignment:
| Q |
21 |
atgtgtcaagagtaatttagagcctcaaataaatgtaatttgctcatgaacttatgagttaatttaatattgaactaatatataacactagaggattctt |
120 |
Q |
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| T |
2540725 |
atgtgtcaagagtaatttagagcctcaaataaatgtaatttgctcatgaacttatgagttaatttaatattgaactaatatataacactagaggattctt |
2540626 |
T |
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| Q |
121 |
gatttctctgtagtcaaggatgttttttaatcatgggctcattctgtgactgattagtactgatttctaaccatcagtatgtttggtttagattttg |
217 |
Q |
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| T |
2540625 |
gatttctctgtagtcaaggatgtcttttaatcatgggctcattctgtgactgactactactgatttctaatcatcagtatgtttggtttagattttg |
2540529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 8777067 - 8777144
Alignment:
| Q |
21 |
atgtgtcaagagtaatttagagcctca--aataaatgtaatttgctcatgaacttatgagttaatttaatattgaact |
96 |
Q |
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| T |
8777067 |
atgtgtcaaaagtaattttgagcttcatgaataaatgtaatttgctcatgaacttatgagttaatttgttattgaact |
8777144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 8789173 - 8789237
Alignment:
| Q |
29 |
agagtaatttagagcctca--aataaatgtaatttgctcatgaacttatgagttaatttaatatt |
91 |
Q |
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| T |
8789173 |
agagtaatgtagagcctcatgaataaatgtaatttactcatgaacttatgagttaatttattatt |
8789237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 8783129 - 8783195
Alignment:
| Q |
29 |
agagtaatttagagcctca--aataaatgtaatttgctcatgaacttatgagttaatttaatattga |
93 |
Q |
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| T |
8783129 |
agagtaatgtagagcctcgtgaataaatgtagtttgctcatgaacttatgagttaatttattattga |
8783195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 8777209 - 8777279
Alignment:
| Q |
147 |
ttaatcatgggctcattctgtgactgattagtactgatttctaaccatcagtatgtttggtttagattttg |
217 |
Q |
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| T |
8777209 |
ttaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactatatttgtgttagattttg |
8777279 |
T |
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