View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_311 (Length: 240)

Name: NF8208A_low_311
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_311
NF8208A_low_311
[»] chr1 (7 HSPs)
chr1 (19-220)||(6521747-6521948)
chr1 (127-220)||(47778065-47778158)
chr1 (135-220)||(6506903-6506988)
chr1 (127-220)||(47788187-47788280)
chr1 (19-65)||(6517087-6517133)
chr1 (152-219)||(6517220-6517287)
chr1 (131-220)||(47781973-47782062)
[»] scaffold0341 (2 HSPs)
scaffold0341 (135-220)||(928-1013)
scaffold0341 (135-220)||(8581-8666)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 6521948 - 6521747
Alignment:
Q  19 atttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgt 118  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  6521948 atttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgt 6521849  T
Q  119 attccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6521848 attccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgct 6521749  T
Q  219 tc 220  Q
    ||    
T  6521748 tc 6521747  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 47778158 - 47778065
Alignment:
Q  127 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| |||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 6506903 - 6506988
Alignment:
Q  135 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 6506988  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 47788280 - 47788187
Alignment:
Q  127 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttc 47788187  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6517087 - 6517133
Alignment:
Q  19 atttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 65  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517087 atttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 6517220 - 6517287
Alignment:
Q  152 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgctt 219  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| ||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 47782062 - 47781973
Alignment:
Q  131 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttc 47781973  T

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Target: scaffold0341 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 928 - 1013
Alignment:
Q  135 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 1013  T

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Target: scaffold0341; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 8581 - 8666
Alignment:
Q  135 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 220  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 8666  T

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