View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_312 (Length: 240)
Name: NF8208A_low_312
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_312 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 41760537 - 41760655
Alignment:
| Q |
25 |
gtcgaagaatatattgaaaatataattttcatagacgaagaacaaggagaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcgg |
124 |
Q |
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| T |
41760537 |
gtcgaagaaaatattgaaaatataattttcatagacgaagaacaaggagaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcgg |
41760636 |
T |
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| Q |
125 |
aaattgattacattctaat |
143 |
Q |
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| T |
41760637 |
aaattgattacattctaat |
41760655 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 41795385 - 41795456
Alignment:
| Q |
72 |
agaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
143 |
Q |
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| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaat |
41795456 |
T |
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