View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_314 (Length: 240)
Name: NF8208A_low_314
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_314 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 27732142 - 27731921
Alignment:
| Q |
19 |
aaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtcttgcgctgcggctggtggtggtggtgatcatggtcaggtacataaa |
118 |
Q |
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| T |
27732142 |
aaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtcttgcgctgcggctggtggtggtggtgatcatggtcaggtacataaa |
27732043 |
T |
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| Q |
119 |
aagttcaaagtttcaagcaacgtggataatgacaagatcaaggtgaaggagaataataataataacagtaaaaagagtttgtggatgatattcaagatta |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
27732042 |
aagttcaaagtttcaagcaatgtggataatgacaagatcaaggtgaaggagaataataataataacagtaaaaagagtttgcggctgatattcaagatta |
27731943 |
T |
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| Q |
219 |
aagacaacaaggtctggcaatg |
240 |
Q |
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| T |
27731942 |
aagacaacaaggtctggcaatg |
27731921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 21155590 - 21155455
Alignment:
| Q |
19 |
aaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtcttgcgctgcggctggtggtggtggtgatcatggtcaggtacataaa |
118 |
Q |
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| T |
21155590 |
aaatatcattgatcatgaacaaattaatggagcacatacactcttccatatctcttg---tgctgctgctcgtggtggtgatcatggtcatctacatgaa |
21155494 |
T |
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| Q |
119 |
aagttcaaagtttcaagcaacgtggataatgacaagatc |
157 |
Q |
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| T |
21155493 |
aagctcaaagcttcaagcaatgtggataatgacaagatc |
21155455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 21155407 - 21155338
Alignment:
| Q |
163 |
gaaggagaataataataataacagtaaaaagagtttgtggatgatattcaagattaaagacaacaaggtc |
232 |
Q |
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| T |
21155407 |
gaaggataataatgataataaccgtaaaaagagtttgttgttgagattcaaggttaaagacaacaaggtc |
21155338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 3073778 - 3073644
Alignment:
| Q |
19 |
aaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtcttgcgctgcggctggtggtggtggtgatcatggtcaggtacataaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| | | || |||||| |||||||||||| |||||||| |
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| T |
3073778 |
aaatatcattgatcatgaacatcttaatggagcatatacactcttcgatatgtcttgcacaac----tgtcgtggtgctgatcatggtcacctacataaa |
3073683 |
T |
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| Q |
119 |
aagttcaaagtttcaagcaacgtggataatgacaagatc |
157 |
Q |
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| T |
3073682 |
aagttcaaagcttcaacaattgtggataatgacaagatc |
3073644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 21249569 - 21249631
Alignment:
| Q |
177 |
ataataacagtaaaaagagtttgtggatgatattcaagattaaagacaacaaggtctggcaatg |
240 |
Q |
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| T |
21249569 |
ataataacagtaaaaagagtttgct-atgctatccaagattaaagacaacaaggtctggcaatg |
21249631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 21249473 - 21249519
Alignment:
| Q |
111 |
tacataaaaagttcaaagtttcaagcaacgtggataatgacaagatc |
157 |
Q |
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| T |
21249473 |
tacataaaaagctcaaagcttcaagcaatgtggataatgaaaagatc |
21249519 |
T |
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