View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_315 (Length: 240)
Name: NF8208A_low_315
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_315 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 44928060 - 44928220
Alignment:
| Q |
71 |
ttttctgggccaatcactgaaaaaatttatttgctaaacccattttcgtaggtatcagtgacagatgataattgtcaagctcatattcctacattttctt |
170 |
Q |
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| T |
44928060 |
ttttctgggccaatcactgaaaaaattcatttgctaaacccattttcgtaggtatcagtgacagatgataattgtcaagctcatattcctacattttctt |
44928159 |
T |
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| Q |
171 |
gtcggttgggtgtatatatagaaggatcagtctcgcctcctctttctggtgttcatatcag |
231 |
Q |
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| T |
44928160 |
gtcggttgggtgtatatatagaaggatcagtctcgcctcctctttctggtgttcatatcag |
44928220 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 44927995 - 44928039
Alignment:
| Q |
17 |
acatcatgtatgtaacaaaggagaggactagtttgtctagtgctg |
61 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44927995 |
acatcatgtaagtaacaaaggagaggactagtttgtctagtgctg |
44928039 |
T |
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