View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_317 (Length: 239)
Name: NF8208A_low_317
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_317 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 2710942 - 2710737
Alignment:
| Q |
21 |
atgaagctcatgatttgtgggatgatgaaattcactgcaacaaaaacacaaagtagaccaatttttctgtgaatactaaggctctgattagtaaaattaa |
120 |
Q |
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| T |
2710942 |
atgaagctcatgatttgtgggatgatgaaattcactgcaacaaaaatacaaagtaaaccaatttttctgtgaatactaaggctctgattagtaaaattaa |
2710843 |
T |
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| Q |
121 |
gttataacttagatgatagttgaaaagctagtttataactaataattgatagtttatatttgaaaagctagacgtttgaaattcaagtgtttgcggttca |
220 |
Q |
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| T |
2710842 |
gttataagttagttgatagttgaaaagctagtttataactaataattgatagtttatatttgaaaagctagaccgttgaaattcaagtgtttgcggttct |
2710743 |
T |
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| Q |
221 |
tctcag |
226 |
Q |
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|||||| |
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| T |
2710742 |
tctcag |
2710737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 29050541 - 29050587
Alignment:
| Q |
111 |
gtaaaattaagttataacttagatgatagttgaaaagctagtttata |
157 |
Q |
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| T |
29050541 |
gtaaaaataagttataagttagatgatagctgaaaagctagcttata |
29050587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 22708210 - 22708112
Alignment:
| Q |
93 |
atactaaggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttataactaataattgatagtttatatttgaaaagctag |
191 |
Q |
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| T |
22708210 |
atactaaggctctgtttggtaaaaataagctataagctagctgatagctgaaaagctagctgatgactgatagctgatagcttatagctgaaaagctag |
22708112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 40675524 - 40675466
Alignment:
| Q |
99 |
aggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttata |
157 |
Q |
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|||||||| ||||||||| ||||||||| |||| ||||||||||||| |||| ||||| |
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| T |
40675524 |
aggctctgtttagtaaaaaaaagttataagttagctgatagttgaaaaactagcttata |
40675466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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