View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_318 (Length: 239)
Name: NF8208A_low_318
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_318 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 40086935 - 40086736
Alignment:
| Q |
19 |
actatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40086935 |
actatccatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataagaaggttg |
40086836 |
T |
|
| Q |
119 |
aaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctctatggta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40086835 |
aaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggta |
40086736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 40061036 - 40060837
Alignment:
| Q |
19 |
actatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtattt-gtgacggctacaacatgaacaatagat-ttcaataataaggt |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||| |||| ||||||||||||||||| | || || | || ||| |
|
|
| T |
40061036 |
actatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagtatgtaggc |
40060937 |
T |
|
| Q |
117 |
tgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctctatgg |
216 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
40060936 |
tgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatgg |
40060839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 40079169 - 40078963
Alignment:
| Q |
19 |
actatgcatgtgatattatcaatttatcttcttcgatg-------tattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataat |
111 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||| | ||||||||||| || ||||| || ||||||||||||||||| | || || | |
|
|
| T |
40079169 |
actatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaacatgaacaaaatatactcgtatt |
40079070 |
T |
|
| Q |
112 |
aaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctc |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
40079069 |
aaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctc |
40078970 |
T |
|
| Q |
212 |
tatggta |
218 |
Q |
| |
|
|||||| |
|
|
| T |
40078969 |
catggta |
40078963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 22014420 - 22014476
Alignment:
| Q |
126 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcc |
182 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| |
|
|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtcc |
22014476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 52548938 - 52548990
Alignment:
| Q |
159 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctc |
211 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||| |
|
|
| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctc |
52548990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 35259417 - 35259377
Alignment:
| Q |
128 |
taccatactcatcaatcggtgcatcaaaatcataacttgta |
168 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
35259417 |
taccatactcatcaattggagcatcataatcataacttgta |
35259377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University