View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_319 (Length: 239)
Name: NF8208A_low_319
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_319 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49165887 - 49166116
Alignment:
| Q |
1 |
gcgcagcgtgtacgaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165887 |
gcgcagcgtgtacgaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattga |
49165986 |
T |
|
| Q |
101 |
tgtattatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165987 |
tgtattatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgct |
49166086 |
T |
|
| Q |
201 |
tgccaacaaggaagatgttgtgcttgatgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49166087 |
tgccaacaaggaagatgttgtgcttgatgt |
49166116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 43752422 - 43752543
Alignment:
| Q |
108 |
tccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaac |
207 |
Q |
| |
|
|||||||||||| |||| |||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||| | ||| |
|
|
| T |
43752422 |
tccatccgaaccgtcaaccaagttgagtacaggttggagtaagtttgtagaggaaaataaattggaggctggagatgtatgtgtttttgagctcgtcaat |
43752521 |
T |
|
| Q |
208 |
aaggaagatgttgtgcttgatg |
229 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
43752522 |
aaggaagatcttgtgtttgatg |
43752543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University