View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_32 (Length: 413)
Name: NF8208A_low_32
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 28 - 397
Target Start/End: Complemental strand, 2574212 - 2573843
Alignment:
| Q |
28 |
aaatgtactattactttgcaatcattaaatatagtctatatgtatacctggagttgttttaatttgtagagagctacttcctggcatcaatgcacatata |
127 |
Q |
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| T |
2574212 |
aaatgtactattactttgcaatcattaaatatagtctatatgtatacctggagttgttttaatttgtagagagctacttcctggcatcaatgcacatata |
2574113 |
T |
|
| Q |
128 |
aatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattccttgacaaaagatgaaaggaaaacaattagaattaattagttaa |
227 |
Q |
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| T |
2574112 |
aatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattccttgacaaaagatgaaaggaaaacaattagaattaattagttaa |
2574013 |
T |
|
| Q |
228 |
ttttttcctttgaactaatgtttactaaagaatacagttttgctatatggtagtcaatggtttagctataaatatgaatacctgtgttagtagtgtttga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
2574012 |
ttttttcctttgaactaatgtttactaaagaatacagttttgctatatggtagtcaatggtttaactataaatatgaatacctgtgttagtaatgtttga |
2573913 |
T |
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| Q |
328 |
gctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgatgt |
397 |
Q |
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| T |
2573912 |
gctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgatgt |
2573843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 397
Target Start/End: Complemental strand, 2564094 - 2563993
Alignment:
| Q |
296 |
taaatatgaatacctgtgttagtagtgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat |
395 |
Q |
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| T |
2564094 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat |
2563995 |
T |
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| Q |
396 |
gt |
397 |
Q |
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|| |
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| T |
2563994 |
gt |
2563993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 2564288 - 2564173
Alignment:
| Q |
70 |
tatacctggagttgttttaatttgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaactcttccctc |
169 |
Q |
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|||||| || ||| ||||||| ||||||||| ||||||| ||||||| |||||||||||||||||| ||||| | |||| ||| ||||| || | | || |
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| T |
2564288 |
tataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttc |
2564189 |
T |
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| Q |
170 |
ccgccataaaattcct |
185 |
Q |
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|| ||||| ||||||| |
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| T |
2564188 |
ccaccatagaattcct |
2564173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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