View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_321 (Length: 238)
Name: NF8208A_low_321
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_321 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29188865 - 29189093
Alignment:
| Q |
1 |
tagctataacatcttctgctaaaccatatgaagaaggattcgttaacatacagacatacgtgtaagtgtgccgaatccataggcgggtttccttcacatt |
100 |
Q |
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| T |
29188865 |
tagctataacatctgctgctaaaccatatgaagaaggattcgttaacatacagacatacgtgtaagtgtgccgaatccataggcgggcttccttcacatt |
29188964 |
T |
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| Q |
101 |
ttgaactgtaccgagaacaatctctgcattcagctgatcagctagcttagaaataaactga--ctcattaagaataaccggattctttccagctacagac |
198 |
Q |
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| T |
29188965 |
ttgaactgtaccgagaacaatctctgcattcagctgatcagctagcttagaaataaactgactctcattaagaataaccggattctttccagctatagac |
29189064 |
T |
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| Q |
199 |
ataaccttttccatacatacacggttcat |
227 |
Q |
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| T |
29189065 |
ataaccttttccatacatacacggttcat |
29189093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 29263792 - 29263729
Alignment:
| Q |
97 |
cattttgaactgtaccgagaacaatctctgcattcagctgatcagctagcttagaaataaactg |
160 |
Q |
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| T |
29263792 |
cattctgaactgtaccgagaacaatctctgcattcagctgatcagccagcttggaaataaactg |
29263729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 2796287 - 2796216
Alignment:
| Q |
89 |
ttccttcacattttgaactgtaccgagaacaatctctgcattcagctgatcagctagcttagaaataaactg |
160 |
Q |
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| T |
2796287 |
ttccttcgcattttgaacggtaccgagaacaatttccgcattcagctgatcggccagcttggaaataaactg |
2796216 |
T |
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