View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_323 (Length: 238)
Name: NF8208A_low_323
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_323 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 11964891 - 11964689
Alignment:
| Q |
18 |
tcattgtgattttatggtttgtttccgttaatcggagatattttatgtcgatcagtcagtttgctgtctgttgaaccgtgttaagttatgactcagtttc |
117 |
Q |
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| T |
11964891 |
tcattgtgatttcatggtttgtttctgttaattggagatattttatgtcgatcagtcagtttgctgtctgttgaaccgtgttaagttatgactcagtttc |
11964792 |
T |
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| Q |
118 |
tcactcttagtcttctgatgtttgtttggttattccataatgtgatgcaaacaatgaatgactttggtgacaattatctttgaatcattgcctcccacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11964791 |
tcactcttagtcttctgatgtttgtttggttattccataatgtgatgcaaacaatgaatgactttggtgacaattatctttgaatcattgcctcccacat |
11964692 |
T |
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| Q |
218 |
att |
220 |
Q |
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||| |
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| T |
11964691 |
att |
11964689 |
T |
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