View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_326 (Length: 237)
Name: NF8208A_low_326
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_326 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 39780958 - 39781178
Alignment:
| Q |
18 |
caacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttccnnnnnnnnnnnnn-ctgaactccctaaacct |
116 |
Q |
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| T |
39780958 |
caacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttccttttttttttttctctgaactccctaaacct |
39781057 |
T |
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| Q |
117 |
ctaatattataaatagctatagctaatagcaaaaaatttatgaatatgttattttatataacttttcaattcaaacccatcaaattaacacttaaacaaa |
216 |
Q |
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| T |
39781058 |
ctaatattataaatagctatagctaatagcaaaaattttatgaatatgttattttatataacttttcaattcaaacccatcaaattaacacttaaacaaa |
39781157 |
T |
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| Q |
217 |
atgtgaagatcaatttgaaaa |
237 |
Q |
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| T |
39781158 |
atgtgaagatcaatttgaaaa |
39781178 |
T |
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