View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_331 (Length: 236)
Name: NF8208A_low_331
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_331 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 6539151 - 6538931
Alignment:
| Q |
16 |
ataatagttcaactactcctcctttggctttactataagtctcatttaagaaaatacattggttgtagtcttgtgtataatttctttttattgtgttatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539151 |
ataatagttcaactactcctcctttggctttactataagtctcatttaagaaaatacattggttgtagtcttgtgtataatttctttttattgtgttatt |
6539052 |
T |
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| Q |
116 |
aagctatgagagttttatataatagattagtcttttaagtttgacacttttcatagcttaaatcataacaattgagagtacatcactgaatagtgacaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
6539051 |
aagctatgagagttttatataatagattagtcttttaagtttgacacttttcatagcttaaatcataacaattgagagtacaccattgaatagtgacaga |
6538952 |
T |
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| Q |
216 |
ttagtgaagacttgaaagaag |
236 |
Q |
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||||||||||||| ||||||| |
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| T |
6538951 |
ttagtgaagacttcaaagaag |
6538931 |
T |
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