View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_332 (Length: 236)

Name: NF8208A_low_332
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_332
NF8208A_low_332
[»] chr3 (3 HSPs)
chr3 (10-230)||(53984804-53985024)
chr3 (10-227)||(53971099-53971315)
chr3 (166-222)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (166-227)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (166-230)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (167-227)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (166-207)||(19935380-19935421)
chr7 (166-207)||(19966519-19966560)
chr7 (166-213)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 53984804 - 53985024
Alignment:
Q  10 atgaaatgcacgtcggaatattctgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984804 atgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 53984903  T
Q  110 gtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttga 209  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984904 gtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttga 53985003  T
Q  210 agcacgtctagcatccacttc 230  Q
    |||||||||||||||||||||    
T  53985004 agcacgtctagcatccacttc 53985024  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 53971099 - 53971315
Alignment:
Q  10 atgaaatgcacgtcggaatattctgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 109  Q
    ||||||| || ||||||| ||| ||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | |||||| |||    
T  53971099 atgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagacatgt 53971198  T
Q  110 gtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactatgttg 208  Q
      ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| ||||||||||     
T  53971199 --agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatgtta 53971296  T
Q  209 aagcacgtctagcatccac 227  Q
     ||||||||||||||||||    
T  53971297 gagcacgtctagcatccac 53971315  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 222  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 227  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac 34036297  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc 230  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc 6688093  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
Q  167 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 227  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac 16164058  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 207  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 207  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
Q  166 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca 213  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca 31014482  T

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