View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_339 (Length: 235)
Name: NF8208A_low_339
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_339 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 10274649 - 10274788
Alignment:
| Q |
18 |
aaatgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagtggaaataaactttggcttacataagcaa |
117 |
Q |
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| T |
10274649 |
aaatgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagtggaaataaactttggcttacataagcaa |
10274748 |
T |
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| Q |
118 |
aatgtgtcatccaaacttaaccgttcatttacaatttctt |
157 |
Q |
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| T |
10274749 |
aatgtgtcatccaaacttaaccgttcatttacaatttctt |
10274788 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10266734 - 10266805
Alignment:
| Q |
18 |
aaatgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagt |
89 |
Q |
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| T |
10266734 |
aaatgaaatggggtaacgataaaataaagttagataaagaaatgttcagaaaaagccaaagactaatgaagt |
10266805 |
T |
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