View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_34 (Length: 410)
Name: NF8208A_low_34
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 4969162 - 4968753
Alignment:
| Q |
8 |
gttgttctttgatctcgaaaaattggttaattgtgaagtgcaccaaaccaacatcaaaagattatttaatcattacgaatattgaatcttagacaagaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4969162 |
gttgttctttgatctcgaaaaattggttaattgtgaagtgcaccaaaccaacatcaaaagattatttaatcattgtgaatattgaatcttagacaagaca |
4969063 |
T |
|
| Q |
108 |
agttat--gataatctgaaaaaccttatgtgtgtgatggtatgtattgatagttttggaaaatgttttggtttaaagaaatgttcaacgatttggatgtt |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969062 |
agttatctgataatctgaaaaaccttatgtgtgtgatggtgtgtattgatagttttggaaaatgttttggtttaaagaaatgttcaacgatttggatgtt |
4968963 |
T |
|
| Q |
206 |
aaacatgaggaattgaaattacaaagaatt----------gaaagaagttatgtttcaaaacaaagtgaacttggcgcggatgctagggtgggcaagtga |
295 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4968962 |
aaatatgaggaattgaaattacaaagaattgaactgaaccgaaagaagttatgtttcaaaacaaagtgaacttggcgccgatgctagggtgggcaagtga |
4968863 |
T |
|
| Q |
296 |
agcaagtctctcacgatggacaagttatttgaatcgtcggatgaatgatgttatgttacaccgtcagaatgatatatatttc-tttctctctctcaatca |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4968862 |
agcaagtctctcacgatggacaagttatttgaatcgtccgataaatgatgttatgttacaccatcagaatgatatatatttcttttctctctctcaatca |
4968763 |
T |
|
| Q |
395 |
tctctttgct |
404 |
Q |
| |
|
|||||||||| |
|
|
| T |
4968762 |
tctctttgct |
4968753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University