View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_342 (Length: 235)

Name: NF8208A_low_342
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_342
NF8208A_low_342
[»] chr8 (5 HSPs)
chr8 (1-223)||(4124019-4124241)
chr8 (1-223)||(4153369-4153591)
chr8 (1-220)||(4134564-4134783)
chr8 (1-220)||(4145366-4145585)
chr8 (3-223)||(4163724-4163950)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4124019 - 4124241
Alignment:
Q  1 gtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124019 gtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 4124118  T
Q  101 gtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattctatttgaatctttgagtggttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  4124119 gtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttga 4124218  T
Q  201 tctctgtttgcaatccatatatt 223  Q
    |||||||||||||||||||||||    
T  4124219 tctctgtttgcaatccatatatt 4124241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4153369 - 4153591
Alignment:
Q  1 gtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4153369 gtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 4153468  T
Q  101 gtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattctatttgaatctttgagtggttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4153469 gtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga 4153568  T
Q  201 tctctgtttgcaatccatatatt 223  Q
    |||||||||||||||||||||||    
T  4153569 tctctgtttgcaatccatatatt 4153591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4134564 - 4134783
Alignment:
Q  1 gtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||    
T  4134564 gtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaat 4134663  T
Q  101 gtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattctatttgaatctttgagtggttga 200  Q
    |||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4134664 gtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga 4134763  T
Q  201 tctctgtttgcaatccatat 220  Q
    ||||||||||||||||||||    
T  4134764 tctctgtttgcaatccatat 4134783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4145366 - 4145585
Alignment:
Q  1 gtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaat 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||    
T  4145366 gtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaat 4145465  T
Q  101 gtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattctatttgaatctttgagtggttga 200  Q
    |||||||||||| || ||    ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  4145466 gtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttga 4145565  T
Q  201 tctctgtttgcaatccatat 220  Q
    ||||||||||||||||||||    
T  4145566 tctctgtttgcaatccatat 4145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 4163724 - 4163950
Alignment:
Q  3 gtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa----ga--tg 96  Q
    |||||||||||||| ||||||| || |||| |||| || || | |||||||||||||  |||| ||||||||||||| |||||| |||||    ||  ||    
T  4163724 gtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg 4163823  T
Q  97 aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattctatttgaatctttgagtgg 196  Q
    ||||| |||||||||| || ||   |||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  4163824 aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtgg 4163923  T
Q  197 ttgatctctgtttgcaatccatatatt 223  Q
    |||||||||||||||||||||||||||    
T  4163924 ttgatctctgtttgcaatccatatatt 4163950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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