View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_354 (Length: 232)

Name: NF8208A_low_354
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_354
NF8208A_low_354
[»] chr5 (7 HSPs)
chr5 (1-232)||(37704676-37704907)
chr5 (7-143)||(37699207-37699349)
chr5 (7-83)||(37437747-37437823)
chr5 (157-232)||(30384213-30384287)
chr5 (157-232)||(29531876-29531950)
chr5 (157-232)||(13953542-13953616)
chr5 (155-232)||(37705114-37705191)
[»] chr4 (1 HSPs)
chr4 (7-143)||(16840857-16841003)
[»] chr1 (2 HSPs)
chr1 (155-230)||(48673381-48673456)
chr1 (156-225)||(16554303-16554372)
[»] chr8 (2 HSPs)
chr8 (156-232)||(27532989-27533065)
chr8 (203-232)||(18080600-18080629)
[»] chr3 (2 HSPs)
chr3 (156-232)||(44291433-44291509)
chr3 (157-225)||(44290996-44291062)
[»] chr6 (3 HSPs)
chr6 (202-232)||(196257-196287)
chr6 (155-232)||(10544045-10544121)
chr6 (203-232)||(17411089-17411118)
[»] chr7 (1 HSPs)
chr7 (156-225)||(30551971-30552040)
[»] chr2 (1 HSPs)
chr2 (157-221)||(45385857-45385921)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37704676 - 37704907
Alignment:
Q  1 gttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704676 gttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttaga 37704775  T
Q  101 atcggagacttagacttcttcaaatgtacatactttaaagagcagattacgatacttttaagttatttaattataacaaatcggttttttaagatctttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  37704776 atcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggttttttaagatttttt 37704875  T
Q  201 cgtatcacttacgtcatttaagttatttaatt 232  Q
    |||||||||| |||||||||||||||||||||    
T  37704876 cgtatcacttgcgtcatttaagttatttaatt 37704907  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 37699207 - 37699349
Alignment:
Q  7 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttaga 100  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||      ||||||||||||||||||     
T  37699207 ataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagc 37699306  T
Q  101 atcggagacttagacttcttcaaatgtacatactttaaagagc 143  Q
    | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699307 aacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 37437747 - 37437823
Alignment:
Q  7 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa 83  Q
    |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  37437747 ataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa 37437823  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 30384213 - 30384287
Alignment:
Q  157 tttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    |||||||||||||||| ||||||||  || ||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  30384213 tttaagttatttaattgtaacaaatttgtcttttaagtt-ttttcgtattacttacgtcttttaagttatttaatt 30384287  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 29531876 - 29531950
Alignment:
Q  157 tttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    |||||||||||||||| ||| ||||  ||  |||||| | ||||||||||| ||||||||||||||||||||||||    
T  29531876 tttaagttatttaattgtaataaattagtcctttaagtt-ttttcgtatcatttacgtcatttaagttatttaatt 29531950  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 13953616 - 13953542
Alignment:
Q  157 tttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    |||||||| ||||||||||| |||| ||||||||||| | ||||| || | |||| ||||||||||||| ||||||    
T  13953616 tttaagttgtttaattataataaattggttttttaag-ttttttcataccgcttaagtcatttaagttaattaatt 13953542  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 37705191 - 37705114
Alignment:
Q  155 cttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    ||||||||||||||| || ||| |||| |||  |||||||| ||| |||| |||||| ||| ||||||||| ||||||    
T  37705191 cttttaagttatttagttgtaagaaattggtcatttaagatttttacgtaccacttaggtcctttaagttaattaatt 37705114  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 16841003 - 16840857
Alignment:
Q  7 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtatt 96  Q
    ||||||||||||||||||||||||| |||||||| ||| |||| |||||||||    ||||||||||||||||||||||      |||||||| ||||||    
T  16841003 ataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatt 16840904  T
Q  97 tagaatcggagacttagacttcttcaaatgtacatactttaaagagc 143  Q
    ||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840903 tagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 48673381 - 48673456
Alignment:
Q  155 cttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaa 230  Q
    ||||||||||||||||||||||||| | |||  |||||  | ||||| ||||| ||||||| ||||||||||||||    
T  48673381 cttttaagttatttaattataacaagttggtcatttaaattattttcatatcagttacgtcctttaagttatttaa 48673456  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 16554303 - 16554372
Alignment:
Q  156 ttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagtta 225  Q
    ||||||||||||||||| ||| |||| |||  |||||| | |||| ||| |||||| |||||||||||||    
T  16554303 ttttaagttatttaattgtaataaattggtcctttaagtttttttggtaccacttaagtcatttaagtta 16554372  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 27532989 - 27533065
Alignment:
Q  156 ttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    ||||||||||||||||| ||| |||| | | ||||||| | |||  ||| |||||||||| ||||||||||||||||    
T  27532989 ttttaagttatttaattgtaataaattgatcttttaagttttttatgtaccacttacgtcctttaagttatttaatt 27533065  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 18080600 - 18080629
Alignment:
Q  203 tatcacttacgtcatttaagttatttaatt 232  Q
    ||||||||||||||||||||||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaatt 18080629  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 44291509 - 44291433
Alignment:
Q  156 ttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    ||||||||||||||||| |||||||| |||  | |||  | |||| |||||||||| ||| ||||||||||||||||    
T  44291509 ttttaagttatttaattgtaacaaattggtcctctaaatttttttagtatcacttatgtcctttaagttatttaatt 44291433  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 44290996 - 44291062
Alignment:
Q  157 tttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagtta 225  Q
    |||||||||||||||| |||||||    ||||||||| | |||||||| |||||| |||||||||||||    
T  44290996 tttaagttatttaattgtaacaaaat--ttttttaagtttttttcgtaccacttaagtcatttaagtta 44291062  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 196287 - 196257
Alignment:
Q  202 gtatcacttacgtcatttaagttatttaatt 232  Q
    |||||||||||||||||||||||||||||||    
T  196287 gtatcacttacgtcatttaagttatttaatt 196257  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 10544045 - 10544121
Alignment:
Q  155 cttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagttatttaatt 232  Q
    |||| ||||||||| |||||||||| | ||| ||||||| | |||| |||||| ||| ||| ||||||||||||||||    
T  10544045 ctttgaagttatttgattataacaagttggtcttttaaggtttttt-gtatcatttaggtcttttaagttatttaatt 10544121  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 17411089 - 17411118
Alignment:
Q  203 tatcacttacgtcatttaagttatttaatt 232  Q
    ||||||||||||||||||||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaatt 17411118  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 30552040 - 30551971
Alignment:
Q  156 ttttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaagtta 225  Q
    ||||||||||||||||| ||| |||| |||  |||||| | |||| ||| |||||| |||||||||||||    
T  30552040 ttttaagttatttaattgtaataaattggtcctttaagtttttttggtaccacttaggtcatttaagtta 30551971  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 45385857 - 45385921
Alignment:
Q  157 tttaagttatttaattataacaaatcggttttttaagatcttttcgtatcacttacgtcatttaa 221  Q
    |||||||||||||||| |||||||| ||   |||||| | |||||||| |||||||||| |||||    
T  45385857 tttaagttatttaattgtaacaaattggccctttaagtttttttcgtaccacttacgtcctttaa 45385921  T

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