View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_366 (Length: 230)
Name: NF8208A_low_366
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_366 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 3429006 - 3429197
Alignment:
| Q |
20 |
ctaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcatttt |
119 |
Q |
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| T |
3429006 |
ctaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcatttt |
3429105 |
T |
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| Q |
120 |
cttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggt |
211 |
Q |
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| T |
3429106 |
cttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggt |
3429197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 3425544 - 3425717
Alignment:
| Q |
40 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta |
136 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
137 |
gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttgg |
210 |
Q |
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| T |
3425644 |
gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgg |
3425717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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