View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_368 (Length: 230)
Name: NF8208A_low_368
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_368 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 40636955 - 40636727
Alignment:
| Q |
2 |
cggtgttttgctgtgttccttgttgaataataatatttgaaataccatatatggtcttcctgtgtgagagattaagaatctcatccaagaagcaattgat |
101 |
Q |
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| T |
40636955 |
cggtgttttgctgtgttccttgttgaataataatatttgaaataccatatacggtcttcctgtgtgagagattaagaatctcatccaagaagcaattgat |
40636856 |
T |
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| Q |
102 |
gtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcatcaagaagggacttgccattttgagccacgattctcagttgttcaacc |
201 |
Q |
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| T |
40636855 |
gtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcatcaagaagggacttgccattttgagccacgattctcagttgttcaacc |
40636756 |
T |
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| Q |
202 |
catactttttgtctttcattcattgggac |
230 |
Q |
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| T |
40636755 |
catactttctgtctttcattcattgggac |
40636727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 40628232 - 40628426
Alignment:
| Q |
30 |
aataatatttgaaataccatatatggtcttcctgtgtgagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctc |
129 |
Q |
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| T |
40628232 |
aataatatttgcaatgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctc |
40628331 |
T |
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| Q |
130 |
caacaaccacccttagcagcagcatcaagaagggacttgccattttgagccacgattctcagttgttcaacccatactttttgtctttcattcat |
224 |
Q |
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| T |
40628332 |
caacaaccaccattaccagcagcatcaacaagggagcgaccattttgagccacaactctcagttggtcaacccatactctctgtctatcattcat |
40628426 |
T |
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