View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_375 (Length: 230)
Name: NF8208A_low_375
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_375 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5952133 - 5952355
Alignment:
| Q |
1 |
gaagttgaaagtccggttgtcgacatcaatccacgaggtatagaattgcatgatggattggtgtttgaggttactgagcagatgaacctctaaataaagc |
100 |
Q |
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| T |
5952133 |
gaagttgaaagttcggttgtcgacatcaatccacgaggtatagaattgcatgatggattggtgtttgaggttactgaggagatgaacctctaaataaagc |
5952232 |
T |
|
| Q |
101 |
ctttctaagtcctctggcgtacgaagcgcttcattgagtttgacttggttccatgctacttctattccaaggaccttatcaatggctttatacactattt |
200 |
Q |
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| T |
5952233 |
ctttctaagtcctctggcgtacgaagtgcttcattgagtttgacttggttccatgctatttctattccaaggaccttatcaatggctttatacactattt |
5952332 |
T |
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| Q |
201 |
tcattgccccttttccaagaata |
223 |
Q |
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| T |
5952333 |
tcattgccccttttccaagaata |
5952355 |
T |
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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 31952578 - 31952665
Alignment:
| Q |
134 |
ttgagtttgacttggttccatgctacttctattccaaggaccttatcaatggctttatacactattttcattgccccttttccaagaa |
221 |
Q |
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| T |
31952578 |
ttgagtctgacttggttccatgctacctctattccaagtacttcatcaattgctttgtatactgtcttcattgccccttttccaagaa |
31952665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 22397341 - 22397380
Alignment:
| Q |
131 |
tcattgagtttgacttggttccatgctacttctattccaa |
170 |
Q |
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| T |
22397341 |
tcattgagtttgacttggttccatgctacctctattccaa |
22397380 |
T |
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