View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_377 (Length: 230)
Name: NF8208A_low_377
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_377 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13886606 - 13886381
Alignment:
| Q |
1 |
aaaaataccatatataaatttgctcatgtttatcaacacatttgcttttcgaaaatttggagaacattatttgcttatatcttctattctcggcaaaata |
100 |
Q |
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| T |
13886606 |
aaaaataccatatataaatttgctcatgtttatcaacacatttgcttttcgaaaatttggagaacattatttgcttatatcttctattctcggcaaaata |
13886507 |
T |
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| Q |
101 |
acttatcttttactttggaatttatctca--ataattttatttttcaaacaatttacactgatctataatgatttagttgcagtcataatctcaacaaac |
198 |
Q |
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| T |
13886506 |
atttatcttttactttggaattcatctcaatataactttattttacagacaatttacacttatctacaatgatttagttgcagtcataatctcaacaaac |
13886407 |
T |
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| Q |
199 |
ttctttttccacaaaccattcttatt |
224 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
13886406 |
ttctgtttccacaaaccattcttatt |
13886381 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 3380805 - 3380855
Alignment:
| Q |
38 |
acatttgcttttcgaaaatttggagaacattatttgcttatatcttctatt |
88 |
Q |
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| T |
3380805 |
acatttgtatttcgagaatttggagagcattagttgcttatatcttctatt |
3380855 |
T |
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