View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_384 (Length: 230)

Name: NF8208A_low_384
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_384
NF8208A_low_384
[»] chr8 (12 HSPs)
chr8 (7-230)||(32633147-32633370)
chr8 (7-230)||(6310468-6310688)
chr8 (9-230)||(13164766-13164984)
chr8 (10-230)||(14404603-14404820)
chr8 (10-230)||(5549675-5549892)
chr8 (7-230)||(5571255-5571475)
chr8 (13-230)||(5608037-5608251)
chr8 (13-230)||(5627119-5627333)
chr8 (148-218)||(12177312-12177382)
chr8 (148-218)||(12421740-12421810)
chr8 (169-218)||(12188633-12188682)
chr8 (169-218)||(12433061-12433110)
[»] scaffold0363 (1 HSPs)
scaffold0363 (10-230)||(14033-14250)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 32633147 - 32633370
Alignment:
Q  7 gttaggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcg 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32633147 gttaggactgaatctgacttgattgaagacattaccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcg 32633246  T
Q  107 atgaaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaac 206  Q
    ||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32633247 atgaaaactatcgcaccattcagtctttaataaaaaaaattgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaac 32633346  T
Q  207 ccttgctgctgctttgtttcaaag 230  Q
    ||||||||||||||||||||||||    
T  32633347 ccttgctgctgctttgtttcaaag 32633370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 6310688 - 6310468
Alignment:
Q  7 gttaggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcg 106  Q
    |||||||||||||||||  ||||||||| |||| | |||| ||||||  ||||||| |||||  |||| |||||||| ||| | |||||||||||||| |    
T  6310688 gttaggactgaatctgaaatgattgaagccattactagagctgtattaggaaaattaaatcaacagtatacaaatgatcttccatgtaatttcatacttg 6310589  T
Q  107 atgaaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaac 206  Q
    ||||||||||| | | |||||| ||||||||         ||||  || ||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  6310588 atgaaaactattggagcattcaatctttaataaaatc---tgatctaacagaagttcaaatcattggactttggggtatgggaggcacaggtaagacaac 6310492  T
Q  207 ccttgctgctgctttgtttcaaag 230  Q
    ||||||||||||| ||||||||||    
T  6310491 ccttgctgctgctatgtttcaaag 6310468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 13164766 - 13164984
Alignment:
Q  9 taggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgat 108  Q
    |||||||||||||||||||||||||||||||  ||||||||||||  ||||||| ||||||  |||| ||| ||| ||||| | || |||||||||||||    
T  13164766 taggactgaatctgacttgattgaagacattatcagagttgtattaggaaaattaaatcaccggtacgcaattgaacttacatatagtttcatactcgat 13164865  T
Q  109 gaaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaaccc 208  Q
    ||||| ||  | | |||| | ||||||||        ||||||||  ||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||    
T  13164866 gaaaattactggagcattaaatctttaat---aaaaattgattcatcagaagttcaaatcattggagtttggggaatggggggcacaggcaagacaaccc 13164962  T
Q  209 ttgctgctgctttgtttcaaag 230  Q
    ||||||||||  ||||||||||    
T  13164963 ttgctgctgccatgtttcaaag 13164984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 14404603 - 14404820
Alignment:
Q  10 aggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgatg 109  Q
    ||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||||  | | ||||||||| ||||| |||||||| ||||| ||||    
T  14404603 aggactgaatctgacttaattgaagacattaccagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatg 14404702  T
Q  110 aaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaaccct 209  Q
    |||||||| | | |||||| || |||||        ||||||||  | ||||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  14404703 aaaactattggagcattcaatcattaat---aaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaaccct 14404799  T
Q  210 tgctgctgctttgtttcaaag 230  Q
    |||| ||  | ||||||||||    
T  14404800 tgcttctattctgtttcaaag 14404820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 5549675 - 5549892
Alignment:
Q  10 aggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgatg 109  Q
    ||||||||||| || || |||| ||||||| || ||| |||||| |||||||| |||||  |   ||||| ||| ||||| |||||||||||||  ||||    
T  5549675 aggactgaatccgaattaattggagacattaccggagctgtattaagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatg 5549774  T
Q  110 aaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaaccct 209  Q
    |||||||||| | |||||| ||||||||        ||||||||| ||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  5549775 aaaactatcggagcattcaatctttaataaaat---ttgattcaacagaagttcaaatcattggagtttggggtatgggaggcattggtaagacaaccct 5549871  T
Q  210 tgctgctgctttgtttcaaag 230  Q
    |||  ||||| ||||||||||    
T  5549872 tgccactgctatgtttcaaag 5549892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 5571255 - 5571475
Alignment:
Q  7 gttaggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcg 106  Q
    ||||||||||||||| || |||||||||||||| |||||| | ||||  | |||||||||||| |||||| | |||| ||||| |||||||| ||||| |    
T  5571255 gttaggactgaatctaacatgattgaagacattaccagagctttattagggaaattgaatcaccagtacagagatgaacttacatgtaatttgatacttg 5571354  T
Q  107 atgaaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaac 206  Q
    ||||||||||| |   | |||  ||||||||        ||||||||| |  |||||||||||||||||||||||| ||||| ||||  |||||||||||    
T  5571355 atgaaaactattgggccgttcgatctttaat---aaaatttgattcaacaacagttcaaatcattggactttggggaatgggaggcactggtaagacaac 5571451  T
Q  207 ccttgctgctgctttgtttcaaag 230  Q
     |||||||||||| ||||||||||    
T  5571452 tcttgctgctgctatgtttcaaag 5571475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 5608251 - 5608037
Alignment:
Q  13 actgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgatgaaa 112  Q
    ||||||||  |||| |||||||||||| |||||| |||| | |||||||| |||||  |   ||||| ||| ||||| |||||||||||||  |||||||    
T  5608251 actgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaa 5608152  T
Q  113 actatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgc 212  Q
    ||||| | | | |||| ||||||||        |||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  5608151 actattggagcgttcaatctttaataaaat---ttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgc 5608055  T
Q  213 tgctgctttgtttcaaag 230  Q
      ||||| ||||||||||    
T  5608054 cactgctatgtttcaaag 5608037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 5627119 - 5627333
Alignment:
Q  13 actgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgatgaaa 112  Q
    ||||||||  |||| |||||||||||| |||||| |||| | |||||||| |||||  |   ||||| ||| ||||| |||||||||||||  |||||||    
T  5627119 actgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaa 5627218  T
Q  113 actatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgc 212  Q
    ||||| | | | |||| ||||||||        |||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  5627219 actattggagcgttcaatctttaataaaat---ttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgc 5627315  T
Q  213 tgctgctttgtttcaaag 230  Q
      ||||| ||||||||||    
T  5627316 cactgctatgtttcaaag 5627333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 12177382 - 12177312
Alignment:
Q  148 gattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgctgctgc 218  Q
    ||||||| |||||||  ||  |||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  12177382 gattcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctgc 12177312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 12421810 - 12421740
Alignment:
Q  148 gattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgctgctgc 218  Q
    ||||||| |||||||  ||  |||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  12421810 gattcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctgc 12421740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 12188682 - 12188633
Alignment:
Q  169 attggactttggggcatggggggcataggtaagacaacccttgctgctgc 218  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  12188682 attggaatttggggcatgggaggcataggaaagacaacccttgctgctgc 12188633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 12433110 - 12433061
Alignment:
Q  169 attggactttggggcatggggggcataggtaagacaacccttgctgctgc 218  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  12433110 attggaatttggggcatgggaggcataggaaagacaacccttgctgctgc 12433061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 14250 - 14033
Alignment:
Q  10 aggactgaatctgacttgattgaagacatttccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgtaatttcatactcgatg 109  Q
    ||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||||  | | ||||||||| ||||| |||||||| ||||| ||||    
T  14250 aggactgaatctgacttaattgaagacattaccagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatg 14151  T
Q  110 aaaactatcgcaacattcagtctttaatnnnnnnnnttgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaaccct 209  Q
    |||||||| | | |||||| || |||||        ||||||||  | ||||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  14150 aaaactattggagcattcaatcattaat---aaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaaccct 14054  T
Q  210 tgctgctgctttgtttcaaag 230  Q
    |||| ||  | ||||||||||    
T  14053 tgcttctattctgtttcaaag 14033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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