View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_39 (Length: 403)
Name: NF8208A_low_39
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 49391769 - 49391422
Alignment:
| Q |
13 |
atcattattttaaggaacacagccacgaccaatggaaaaatgaaccacacgatggttcctgcgaggcctgtcgcctaatgacattagcccgataaaattt |
112 |
Q |
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| T |
49391769 |
atcattgttttaaggaacacagccacgaccaatgggaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagctcaataaaattt |
49391670 |
T |
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| Q |
113 |
tgttcaacttctcgatttgatgaacatgtcacacgtgagagaggatgacgaatctgacacttttctacaacaattctaacttattggctttcagttttga |
212 |
Q |
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| T |
49391669 |
tgttcaacttctcgatttgatgaacatgtcacacgcgagagaggatgacgaatctgtcacttttctgcaacaattttagcttattggctttcagttttaa |
49391570 |
T |
|
| Q |
213 |
ctacagttcttttatttttaaggttataaccctcatcttgcaa-aaactagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
311 |
Q |
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| T |
49391569 |
ctacagttcttttcttttttaggttataaccctcatcttgtaataaattagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
49391470 |
T |
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| Q |
312 |
caggaatagtgaggaaacccaaacatctggtgttcgtcactacatttg |
359 |
Q |
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| T |
49391469 |
caggaatagtgaggaaacccaaacatctggttttcgtcactacatttg |
49391422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 397
Target Start/End: Complemental strand, 3294175 - 3294145
Alignment:
| Q |
367 |
tcaccttaaagatgaataaatgggttgtccg |
397 |
Q |
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| T |
3294175 |
tcaccttaaagatgaataaatgggttgtccg |
3294145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 24881890 - 24881814
Alignment:
| Q |
33 |
agccacgaccaatggaaaaatgaaccacacgatggttcctgcgaggcctgtcgcctaatgacattagcccgataaaa |
109 |
Q |
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||||||||| ||||||| |||||||||| | ||||||||||| || || | | |||| |||||||| ||| |||||| |
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| T |
24881890 |
agccacgactaatggaagaatgaaccactcaatggttcctgcaagacccgccacctagtgacattaacccaataaaa |
24881814 |
T |
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