View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_391 (Length: 229)
Name: NF8208A_low_391
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_391 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6990227 - 6990004
Alignment:
| Q |
1 |
attacgagtcctgatttcagtgtttatttgagtcttcttttcctaacttgaagaaaactatagcacactaaggtgagaggtcccgttttatgctttttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6990227 |
attacgagtcctgatttcagtgtttatttgagtcttcttttcctaacttgaagaaaactatagcacactaaggtgagaggtcccgttttatgctttttat |
6990128 |
T |
|
| Q |
101 |
attgtgaagtgcataatgatttcaaaggctatctcactcttgtacacatactcctatacttttttggtttggatttttaattattgagcatatcatatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6990127 |
attgtgaagtgcataatgatttcaaaggctatctcactcttgtacacatactcctatacttttttggttcggatttttaattattgagcatatcatatgc |
6990028 |
T |
|
| Q |
201 |
accaaaagttgtgttttattgttt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6990027 |
accaaaagttgtgttttattgttt |
6990004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University