View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_392 (Length: 229)
Name: NF8208A_low_392
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_392 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40457015 - 40457238
Alignment:
| Q |
1 |
agtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457015 |
agtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgtta |
40457114 |
T |
|
| Q |
101 |
ttggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457115 |
ttggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgc |
40457214 |
T |
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| Q |
201 |
gaattcctttcttaggatacttct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40457215 |
gaattcctttcttaggatacttct |
40457238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 56393072 - 56393283
Alignment:
| Q |
1 |
agtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgtta |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||| | || || ||||| |||||| |||||||| |||| || |
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| T |
56393072 |
agtaacaacagaaagattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaat------------tattttctgccttattg |
56393159 |
T |
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| Q |
101 |
ttggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgt |
200 |
Q |
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| T |
56393160 |
ctggaattattttttccttttggatgccaatctggatatccatggagtttaaaacatgcttccactacatgattatcaccattacagtgggtacacttac |
56393259 |
T |
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| Q |
201 |
gaattcctttcttaggatacttct |
224 |
Q |
| |
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||| ||||||||| |||||||||| |
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| T |
56393260 |
gaactcctttcttgggatacttct |
56393283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27517310 - 27517521
Alignment:
| Q |
1 |
agtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgtta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| | || || ||||| |||||| |||||||| |||| || |
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| T |
27517310 |
agtaacaacagaaagattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaat------------tattttctgccttattg |
27517397 |
T |
|
| Q |
101 |
ttggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgt |
200 |
Q |
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||||| || ||| |||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27517398 |
atggaattattttttccttttggatgccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattacagtgggtacactaac |
27517497 |
T |
|
| Q |
201 |
gaattcctttcttaggatacttct |
224 |
Q |
| |
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||| ||||||||| |||||||||| |
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| T |
27517498 |
gaactcctttcttgggatacttct |
27517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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