View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_395 (Length: 229)
Name: NF8208A_low_395
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_395 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 21205943 - 21206152
Alignment:
| Q |
1 |
tttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgcta |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21205943 |
tttggtaactacgattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgcta |
21206042 |
T |
|
| Q |
101 |
tcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21206043 |
tcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcgaagaatgttttagttcactttcataaa |
21206142 |
T |
|
| Q |
201 |
ttaacaaaaa |
210 |
Q |
| |
|
|||||||||| |
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| T |
21206143 |
ttaacaaaaa |
21206152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 21183469 - 21183691
Alignment:
| Q |
1 |
tttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgcta |
100 |
Q |
| |
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|||||||||||| ||||||||||||| || |||| ||||| ||||||||||| || || || || ||| ||||||| |||||||||||||||||||||| |
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| T |
21183469 |
tttggtaactacgattcaaataaggaccccaaaaactttaatcttgttgatcctgtcgagagaaacacaattggtgtcccatctggtggatgggttgcta |
21183568 |
T |
|
| Q |
101 |
tcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataaa |
200 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21183569 |
tcagattccttgcagataatcctggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataaa |
21183668 |
T |
|
| Q |
201 |
ttaacaaaaatgtctaattgtgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
21183669 |
ttaacaaaaatgtctaattgtgt |
21183691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21854173 - 21854304
Alignment:
| Q |
1 |
tttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgcta |
100 |
Q |
| |
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|||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21854173 |
tttggtaactttgattcaaatagtgatccacaaaattttaatcttgttgatcctgttgaaaggaatacagttggtgttccatctggtggatgggttgcta |
21854272 |
T |
|
| Q |
101 |
tcagattcctagcagataatccaggttggttc |
132 |
Q |
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|
||||||||||||||||||||||||||| |||| |
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|
| T |
21854273 |
tcagattcctagcagataatccaggttagttc |
21854304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 22635406 - 22635329
Alignment:
| Q |
49 |
gatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
126 |
Q |
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|
||||| || ||||||||||| | |||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
22635406 |
gatcctgtcgaaaggaatactgctggtgttccagctggtggatgggttgctttgagattccttgcagataatccaggt |
22635329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 22603743 - 22603840
Alignment:
| Q |
33 |
aaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggt |
130 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| || ||||||||||| ||||||| |||||||| || ||||| | || |||||||||||||||| |
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| T |
22603743 |
aaaatttaatttggttgatcctgttgaaaggaacactgttggtgttcctgctggtggttgggttgccattagattttttgcggataatccaggttggt |
22603840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 21206167 - 21206195
Alignment:
| Q |
196 |
ataaattaacaaaaatgtctaattgtgtt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
21206167 |
ataaattaacaaaaatgtctaattgtgtt |
21206195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 4384465 - 4384554
Alignment:
| Q |
37 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
126 |
Q |
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||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| |||||||| || |||||| ||| |||||||||||| |
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| T |
4384465 |
tttaaccttgttgatcctgttgaaaggaacactgttggtgtaccagctggtggttgggttgccattagattcagagctgataatccaggt |
4384554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 24068937 - 24068848
Alignment:
| Q |
37 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
126 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||| ||| || |||||||| |||||||| || ||||||| || || ||||||||| |
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| T |
24068937 |
tttaatcttgttgatcctgttgagaggaatactgttgctgtgccttctggtggttgggttgcgatacgattccttgctgacaatccaggt |
24068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 29554653 - 29554733
Alignment:
| Q |
46 |
gttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
126 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
29554653 |
gttgatcctgtggagagaaatacagttggtgttccatctggtggatggactgctatcagattcagggctgataatccaggt |
29554733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 25093265 - 25093364
Alignment:
| Q |
32 |
aaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggtt |
131 |
Q |
| |
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|||| ||||| ||||||||||| || || ||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||||||||||| |||| |
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| T |
25093265 |
aaaagtttaatcttgttgatcctgtggagaggaatacagtaggtgttccagctggaggttggactgctatcagattcaaggctgataatccaggtaggtt |
25093364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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