View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_397 (Length: 229)

Name: NF8208A_low_397
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_397
NF8208A_low_397
[»] chr3 (1 HSPs)
chr3 (1-227)||(3176118-3176344)
[»] chr1 (1 HSPs)
chr1 (9-221)||(24541324-24541537)
[»] chr2 (1 HSPs)
chr2 (1-227)||(41525234-41525460)
[»] chr5 (1 HSPs)
chr5 (1-211)||(20963741-20963952)
[»] chr6 (1 HSPs)
chr6 (8-111)||(14675154-14675257)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3176118 - 3176344
Alignment:
Q  1 tatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3176118 tatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttggag 3176217  T
Q  101 aaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagt 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  3176218 aaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaagagagggagttgagtgatgttggtgtgttgagagagt 3176317  T
Q  201 gtgatagttgatctatttataagagct 227  Q
    |||| ||||||||||||||||||||||    
T  3176318 gtgagagttgatctatttataagagct 3176344  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 24541324 - 24541537
Alignment:
Q  9 ggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaa 108  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||||||    
T  24541324 ggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgctatgaaagaggttatttggagaaagagaa 24541423  T
Q  109 aaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatag 207  Q
    |||  ||||  | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||    
T  24541424 aaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagtgatgttgatgtgttgagagagtgtgagag 24541523  T
Q  208 ttgatctatttata 221  Q
    ||||||||||||||    
T  24541524 ttgatctatttata 24541537  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41525234 - 41525460
Alignment:
Q  1 tatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag 100  Q
    |||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| || |||||||| |||||||||| |||    
T  41525234 tatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttctagctcttcagcaaatgctatgaaggaggttatttggag 41525332  T
Q  101 aaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagag 199  Q
     ||||||||||   ||||||| |||||||||||||||||| |||||||||| | ||| |||| |||||||||||  ||| ||||||||| ||||||||||    
T  41525333 taagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaaagagagggagagaagtaatgttggtgggttgagagag 41525432  T
Q  200 tgtgatagttgatctatttataagagct 227  Q
    ||||| |||||||||||||||| |||||    
T  41525433 tgtgagagttgatctatttataggagct 41525460  T

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Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 20963952 - 20963741
Alignment:
Q  1 tatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag 100  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  || ||||||||||||||||||| |||    
T  20963952 tatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatttggag 20963853  T
Q  101 aaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagaga 198  Q
    |||||||||||  ||||| | |||||||||||||  |||||  ||||||||| | |||||||| ||||||||||| || |||||||||||||||||||||    
T  20963852 aaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttgagaga 20963754  T
Q  199 gtgtgatagttga 211  Q
    |||||| ||||||    
T  20963753 gtgtgagagttga 20963741  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 14675154 - 14675257
Alignment:
Q  8 cggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagaga 107  Q
    ||||||||| |||||||||||||||||  ||| |||||||||||||| |||||| |||||||| || ||  | | |||||||||||||| ||| ||||||    
T  14675154 cggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttatttggagtaagaga 14675253  T
Q  108 aaaa 111  Q
    ||||    
T  14675254 aaaa 14675257  T

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