View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_40 (Length: 403)

Name: NF8208A_low_40
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_40
NF8208A_low_40
[»] chr8 (11 HSPs)
chr8 (7-167)||(45547376-45547536)
chr8 (189-398)||(45531373-45531586)
chr8 (200-398)||(23136651-23136856)
chr8 (282-386)||(23160807-23160913)
chr8 (274-387)||(8351403-8351518)
chr8 (274-387)||(17890663-17890778)
chr8 (274-387)||(18667056-18667170)
chr8 (274-387)||(35136919-35137034)
chr8 (283-387)||(25064194-25064300)
chr8 (274-362)||(45250800-45250890)
chr8 (274-316)||(19742782-19742824)
[»] scaffold0059 (2 HSPs)
scaffold0059 (200-398)||(66920-67117)
scaffold0059 (200-398)||(75025-75222)
[»] chr6 (3 HSPs)
chr6 (200-398)||(1607703-1607903)
chr6 (274-398)||(11550526-11550650)
chr6 (274-398)||(4856635-4856759)
[»] chr3 (7 HSPs)
chr3 (200-398)||(20919454-20919651)
chr3 (200-398)||(20928416-20928613)
chr3 (278-398)||(37198063-37198183)
chr3 (274-387)||(2765791-2765906)
chr3 (274-391)||(50246367-50246486)
chr3 (274-387)||(20783815-20783930)
chr3 (200-259)||(37198007-37198069)
[»] chr2 (5 HSPs)
chr2 (200-394)||(41747554-41747753)
chr2 (274-387)||(16139518-16139633)
chr2 (274-387)||(20103739-20103854)
chr2 (274-387)||(21120084-21120198)
chr2 (274-359)||(24971948-24972035)
[»] chr5 (2 HSPs)
chr5 (274-398)||(9662767-9662891)
chr5 (274-361)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (200-262)||(35648158-35648220)
chr4 (274-387)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (274-387)||(26886-27000)
[»] chr1 (1 HSPs)
chr1 (274-387)||(45915205-45915319)
[»] scaffold0216 (2 HSPs)
scaffold0216 (274-376)||(18275-18379)
scaffold0216 (274-387)||(25465-25580)
[»] chr7 (1 HSPs)
chr7 (274-387)||(29494217-29494332)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 45547536 - 45547376
Alignment:
Q  7 atattatcgttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacgatatcctttgatctttccttacggtga 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45547536 atattatcattagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtga 45547437  T
Q  107 agatggtttctctgaaaatattaaaataagtgaagaggaggaagccaatccagaccgtact 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45547436 agatggtttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 45547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 189 - 398
Target Start/End: Complemental strand, 45531586 - 45531373
Alignment:
Q  189 ccatctctttatcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnn----catagaagttt 284  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||  |||||||||||| ||||||||||||||||             |||||||||||    
T  45531586 ccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttttttgtaaaaaaaaaaaaacatagaagttt 45531487  T
Q  285 aatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 384  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531486 aatcacttggttgtagattatggagttgattttattttttgtgtatcttattgttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 45531387  T
Q  385 ctatattattcgac 398  Q
    ||||||| ||||||    
T  45531386 ctatattcttcgac 45531373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 23136651 - 23136856
Alignment:
Q  200 tcctccataaacaaattcataaaagaaa-----gtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnn--catagaagtttaatcactt 292  Q
    |||||||||||||||||||||||| |||     |||  | ||||||||||||| ||||||||||||||||           |||||||||||||||||||    
T  23136651 tcctccataaacaaattcataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaacaacatagaagtttaatcactt 23136750  T
Q  293 ggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatatta 392  Q
    ||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  23136751 ggttgtagattttggggttgattttattttttgtgtatcttattgttaattgttaattctactttctcaggatcccattgaagagcatgtgtctatatta 23136850  T
Q  393 ttcgac 398  Q
    ||||||    
T  23136851 ttcgac 23136856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 23160913 - 23160807
Alignment:
Q  282 tttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagca 379  Q
    |||||||| ||||||||||||||||| | |||||| ||||||  ||||||||| || ||| || | ||||| |||||||||| | | |||||| ||||||    
T  23160913 tttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattgctaattctactttctcaaggttccattggagagca 23160814  T
Q  380 tgtgtct 386  Q
    |||||||    
T  23160813 tgtgtct 23160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 8351403 - 8351518
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  8351403 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcaaggttccatt 8351502  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  8351503 ggagagcatgtgtcta 8351518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 17890778 - 17890663
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||| | | | |||||    
T  17890778 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttcttagggttccatt 17890679  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  17890678 ggagagcatgtgtcta 17890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 18667056 - 18667170
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||||||||||| ||||||||||||||| | | ||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  18667056 cataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 18667154  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  18667155 ggagagcatgtgtcta 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 35136919 - 35137034
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  35136919 catataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 35137018  T
Q  372 gaagagcatgtgtcta 387  Q
    | |||||| |||||||    
T  35137019 ggagagcacgtgtcta 35137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 25064194 - 25064300
Alignment:
Q  283 ttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcat 380  Q
    ||||||||||||||||  ||||||| |||||||| ||||||  | ||||||| || ||| || ||||||  |||||| ||| | | |||||| |||||||    
T  25064194 ttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgttaatgctactttatcagggttccattggagagcat 25064293  T
Q  381 gtgtcta 387  Q
    |||||||    
T  25064294 gtgtcta 25064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 45250890 - 45250800
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcat 362  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||||    
T  45250890 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcat 45250800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 19742782 - 19742824
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgattt 316  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  19742782 catataagattaatcacttggttgtagattatggggttgattt 19742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 67117 - 66920
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 299  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||         ||| ||||||||||||||||||||||    
T  67117 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 67019  T
Q  300 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattattcgac 398  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  67018 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 66920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 75222 - 75025
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 299  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||         ||| ||||||||||||||||||||||    
T  75222 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 75124  T
Q  300 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattattcgac 398  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  75123 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 75025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 1607903 - 1607703
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttg 297  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||    
T  1607903 tcctccataaacaaattcataaaaaaaagtattttctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttggttg 1607804  T
Q  298 tagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattattcga 397  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  1607803 tagattatggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatattattcga 1607704  T
Q  398 c 398  Q
    |    
T  1607703 c 1607703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 11550526 - 11550650
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattga 373  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  11550526 catagaagtttaatcatttggttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattga 11550625  T
Q  374 agagcatgtgtctatattattcgac 398  Q
     ||||||||||||||||||||||||    
T  11550626 ggagcatgtgtctatattattcgac 11550650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 4856759 - 4856635
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattga 373  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||     
T  4856759 cataaaagtttaatcatttggttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgt 4856660  T
Q  374 agagcatgtgtctatattattcgac 398  Q
     ||||||||||||||||||||||||    
T  4856659 ggagcatgtgtctatattattcgac 4856635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 20919454 - 20919651
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 299  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||         ||| ||||||||||||||||||||||    
T  20919454 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20919552  T
Q  300 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattattcgac 398  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  20919553 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 20928416 - 20928613
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 299  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||         ||| ||||||||||||||||||||||    
T  20928416 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20928514  T
Q  300 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattattcgac 398  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  20928515 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20928613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 278 - 398
Target Start/End: Original strand, 37198063 - 37198183
Alignment:
Q  278 gaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagag 377  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||    
T  37198063 gaagtttaatcacttggttgtatattatgaggtttattttattttttgtgtatcttattgttaattgttaattctactttctcaggaacccattgaagag 37198162  T
Q  378 catgtgtctatattattcgac 398  Q
    |||||||||||||||||||||    
T  37198163 catgtgtctatattattcgac 37198183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 2765906 - 2765791
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||  |||||| |  |||||| || |||||| ||| ||| |||||||||| | |||||||    
T  2765906 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgattctactttctcagggtcccatt 2765807  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  2765806 ggagagcatgtgtcta 2765791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 50246486 - 50246367
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||||||||||||||| || |||||| ||||| | ||||||||  |||||  | ||||||| || |||||| ||| ||  |||||||||| ||||| |||    
T  50246486 catagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatgctactttctcaggatcctatt 50246387  T
Q  372 gaagagcatgtgtctatatt 391  Q
    | ||||||||| ||||||||    
T  50246386 ggagagcatgtttctatatt 50246367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 20783930 - 20783815
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | |  ||||    
T  20783930 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggtttcatt 20783831  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  20783830 ggagagcatgtgtcta 20783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 37198007 - 37198069
Alignment:
Q  200 tcctccataaacaaattcat---aaaagaaagtaattcctgtgttttaaaatcatggaagttt 259  Q
    ||||||||||||||||||||   |||| |||||| || ||||||||||||| |||||||||||    
T  37198007 tcctccataaacaaattcataaaaaaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 200 - 394
Target Start/End: Original strand, 41747554 - 41747753
Alignment:
Q  200 tcctccataaacaaattcataaaagaaa---gtaattcctgtgttttaaaatcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttgg 294  Q
    |||||||||||||||||||||||| |||   |||  | ||||||||||||| ||||||||||||||||           |||||||||||||||||||||    
T  41747554 tcctccataaacaaattcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttgg 41747653  T
Q  295 ttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattatt 394  Q
    ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  41747654 ttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatattatt 41747753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 16139518 - 16139633
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||  | ||||||| || ||| || | ||||  |||||||||| | | |||||    
T  16139518 catataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatctaattgtttattgctaatgctactttctcagggttccatt 16139617  T
Q  372 gaagagcatgtgtcta 387  Q
    | |||| |||||||||    
T  16139618 ggagagtatgtgtcta 16139633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 20103739 - 20103854
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  20103739 catataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 20103838  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  20103839 ggagagcatgtgtcta 20103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 21120084 - 21120198
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||||||||||||||| ||||||||||||| | | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||| | ||||| |    
T  21120084 catagaagtttaatcatttggttgtagattgtag-gttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcagggtcccact 21120182  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  21120183 ggagagcatgtgtcta 21120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 24972035 - 24971948
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttct 359  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||    
T  24972035 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttct 24971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 9662891 - 9662767
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattga 373  Q
    |||||||||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||| |||||||||||||| |||||||||| |||||||||||    
T  9662891 catagaagttaaatcacttggttgtagattatgtggttgattttattttttatgtatcttattgttaatcgttaattctactttctcaggatcccattga 9662792  T
Q  374 agagcatgtgtctatattattcgac 398  Q
    |||||| ||||||||||||||||||    
T  9662791 agagcaggtgtctatattattcgac 9662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 27588856 - 27588945
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctca 361  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||||    
T  27588856 catagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttctca 27588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 35648158 - 35648220
Alignment:
Q  200 tcctccataaacaaattcataaaagaaagtaattcctgtgttttaaaatcatggaagtttttt 262  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||    
T  35648158 tcctccataaacaaattcataaaagaaagaattttctgtgttttaaaagcatggaagtttttt 35648220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 14253092 - 14252977
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  14253092 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 14252993  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  14252992 ggagagcatgtgtcta 14252977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 26886 - 27000
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  26886 catagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 26984  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  26985 ggagagcatgtgtcta 27000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 45915205 - 45915319
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||||||||||| |||||||||||||||  |||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  45915205 cataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 45915303  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  45915304 ggagagcatgtgtcta 45915319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 18275 - 18379
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || || ||| ||| ||  |||||||||| | |||||||    
T  18275 catagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatgctactttctcagggtcccatt 18374  T
Q  372 gaaga 376  Q
    |||||    
T  18375 gaaga 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 25465 - 25580
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||||||||||||||| ||||||||| |||||   ||||||||  |||||  | ||||||| || |||||| ||| ||  || ||||| | | |||||||    
T  25465 catagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaattgttgatgctattttcttagggtcccatt 25564  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  25565 ggagagcatgtgtcta 25580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 29494217 - 29494332
Alignment:
Q  274 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 371  Q
    |||| ||||||||||| ||||||||||||||| |  |||||||  |||||  | ||||||| || |||||| ||| ||  |||||| ||| | |||||||    
T  29494217 catataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatctaattgttaattgttgatgctactttttcagggtcccatt 29494316  T
Q  372 gaagagcatgtgtcta 387  Q
    | ||||||||||||||    
T  29494317 ggagagcatgtgtcta 29494332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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