View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_401 (Length: 228)
Name: NF8208A_low_401
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_401 |
 | |
|
| [»] scaffold0178 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 14446666 - 14446856
Alignment:
| Q |
20 |
cataacataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtcca |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14446666 |
cataacataataaattagattttaacttctaatttgtggaatttcaacaatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtcca |
14446765 |
T |
|
| Q |
120 |
ccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttaccataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
14446766 |
ccagtagtcaagtcctgtcaataagctagtaaaataatcttataagtctgcgagaaagaattgttaccacaagatcaacgatttgtggttc |
14446856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 28846458 - 28846645
Alignment:
| Q |
24 |
acataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccag |
123 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| |||||||||| |||| |||||||| ||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
28846458 |
acataataaatcagattttaacttctaatttgtggatcttcaacaatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccag |
28846557 |
T |
|
| Q |
124 |
ttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| | || ||||||||| |||||||| |
|
|
| T |
28846558 |
ttgccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttc |
28846645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 13152730 - 13152568
Alignment:
| Q |
26 |
ataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagtt |
125 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13152730 |
ataataaattagattttaacttctaatttgtggatcttcaataatagagggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagtt |
13152631 |
T |
|
| Q |
126 |
gtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||||| | |||||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
13152630 |
atcaagccatgtcaaaaagctagtaaaataatcttataagcccgtgagaaagaattgttacca |
13152568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 27190663 - 27190795
Alignment:
| Q |
79 |
caccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaaga |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
27190663 |
caccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaaaga |
27190762 |
T |
|
| Q |
179 |
attgttac-cataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
|||||||| | || ||||||||| |||||||| |
|
|
| T |
27190763 |
attgttacaaacaagatcaacgatgtgtggttc |
27190795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 24333593 - 24333715
Alignment:
| Q |
66 |
acaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataag |
165 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24333593 |
acaatagcaggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaagtcttgtcaataagctagtaaaataatcttataag |
24333692 |
T |
|
| Q |
166 |
tttgcgagaaagaattgttacca |
188 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
24333693 |
cccgtgagaaagaattgttacca |
24333715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 9256259 - 9256348
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaa |
114 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||| |||| |||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9256259 |
cataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaa |
9256348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 30559342 - 30559155
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
30559342 |
cataataaatcagattttaacttataatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggt |
30559243 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgtta-ccataaaatcaacgatctgtggttct |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||| | | || ||||||||| ||||||||| |
|
|
| T |
30559242 |
tgtcaagctttgtcaataagctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttct |
30559155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 14498736 - 14498899
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| ||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
14498736 |
cataattaatcagattttaacttttaatttgtggatcttcaacaatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagt |
14498835 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
14498836 |
catcaagccatgtcaataagctagtaaaataatcttataagctcgtgagaaagatttgttacca |
14498899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 48606949 - 48606763
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
48606949 |
cataataaatcagattttaacttctaatttgtggatcttcaacaatagcaagtgcaccaaagctattaccaaaatcaacaaaagttggaagtccactagt |
48606850 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||||||| ||| | | |||||||||| |||| | || ||||||||| |||||||| |
|
|
| T |
48606849 |
tatcaaaccctgtcaatattctagtaaaataatcttatatgttcgtgggaaagaattgctaccaacaagatcaacgatgtgtggttc |
48606763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 9636960 - 9637122
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||| ||||| | |||||||||| |||||| |||| ||||||||||| |||| |||||||| ||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
9636960 |
catagtaaatcagattttaacttctaatttttggatcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggt |
9637059 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
| | ||| |||| |||||||||||| ||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
9637060 |
tataaagccctgccaataagctagt-aaataatcttataagttcgtgagaaataattgttacca |
9637122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 30054716 - 30054839
Alignment:
| Q |
38 |
attttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgt |
137 |
Q |
| |
|
||||||| || |||||| |||| ||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
30054716 |
attttaatttctaatttatggatcttcaacaatagcgggtgcattaaaaccattaccaacatcaacaaaagttggaagtccaccggttgtcaagccctac |
30054815 |
T |
|
| Q |
138 |
caataagctagtaaaataatctta |
161 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30054816 |
caataagctagtaaaataatctta |
30054839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 52754121 - 52754030
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagt |
116 |
Q |
| |
|
|||||| ||| | |||||||||| ||||||||||| ||||||||||| |||| |||||||| ||||| |||||| ||||||||||| |||| |
|
|
| T |
52754121 |
cataattaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt |
52754030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 31944454 - 31944640
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||||||||||| |||| || |||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31944454 |
cataataaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagt |
31944553 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
| ||||| |||| |||||||||||||||||||||||||||| | | ||||||||||||||||| | || ||||||||| |||||||| |
|
|
| T |
31944554 |
tatcaagccctgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggttc |
31944640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 51379516 - 51379594
Alignment:
| Q |
62 |
ttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaa |
140 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
51379516 |
ttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaagccctatcaa |
51379594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 24104659 - 24104596
Alignment:
| Q |
104 |
aaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtt |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
24104659 |
aaaagttggaagtccaccagttatcaagctctgccaataagctagtaaaagaatcttataagtt |
24104596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 24104769 - 24104671
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagt-gggtacaccaaagttattaccaacatcaacaaaagttggaagtccacca |
122 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| | |||| |||| |||| |||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
24104769 |
cataataaatcagattttaacttctaatttgtggatatgcaacgatagcagggtgcaccaaagctatcaccaacatcaacaaaagttgaaagtccacca |
24104671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 3857214 - 3857028
Alignment:
| Q |
24 |
acataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccag |
123 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||| ||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3857214 |
acataataaatcaaattttaacttctaatttttggatcttcaacaatagcaggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccag |
3857115 |
T |
|
| Q |
124 |
ttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttaccat-aaaatcaacgatctgtggtt |
209 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||| || ||||||||| ||||||| |
|
|
| T |
3857114 |
ttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggtt |
3857028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 51261817 - 51261980
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51261817 |
cataataaatcagatcttaacttctaatttgtggatcttcaacaatagcaggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagt |
51261916 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||| | | || ||||||||||||||| |
|
|
| T |
51261917 |
tgtcaaaccctgtcaataagctagtaaaataatataataagctcgtgaaaaagaattgttacca |
51261980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 15667874 - 15667950
Alignment:
| Q |
88 |
tattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
15667874 |
tattaccaacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataa |
15667950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 55194887 - 55194947
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaa |
85 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
55194887 |
cataataaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcaccaaa |
55194947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 43727834 - 43727997
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | | |||||||| ||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43727834 |
cataataaatcagactttaacttctaattcgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagt |
43727933 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
43727934 |
tatcaactcatgtcaataagctagtaaaataatcttataagcctatgagaaagaattgttacca |
43727997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 5287943 - 5288069
Alignment:
| Q |
62 |
ttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatctta |
161 |
Q |
| |
|
||||| ||||| |||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5287943 |
ttcaaaaatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatctta |
5288042 |
T |
|
| Q |
162 |
taagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||| | | ||||||||| |||||||| |
|
|
| T |
5288043 |
caagctcgtgagaaagaagtgttacca |
5288069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 25024458 - 25024598
Alignment:
| Q |
62 |
ttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatctta |
161 |
Q |
| |
|
||||||||||| || | |||||||| |||||||| |||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
25024458 |
ttcaacaatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataagctagtaaaataatctta |
25024557 |
T |
|
| Q |
162 |
taagtttgcgagaaagaattgttac-cataaaatcaacgat |
201 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
25024558 |
taagccggcgagaaggaattgttactaataaaatcaacgat |
25024598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 9230238 - 9230379
Alignment:
| Q |
24 |
acataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccag |
123 |
Q |
| |
|
||||||| ||| | |||||||| | | |||||| || ||||||||||| |||| |||||||| ||||| ||||||||||||||||||||| | || ||| |
|
|
| T |
9230238 |
acataattaatcagattttaacatcttatttgtcgatattcaacaatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcag |
9230337 |
T |
|
| Q |
124 |
ttgtcaagtcctgtcaataagctagtaaaataatcttataag |
165 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
9230338 |
ttatcaagccatgtcaataagctagtaaaataatcttataag |
9230379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 23804762 - 23804649
Alignment:
| Q |
98 |
atcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatca |
196 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || |||| |
|
|
| T |
23804762 |
atcaacaaaagttagaagtccccccgttgtcaagctctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatca |
23804663 |
T |
|
| Q |
197 |
acgatctgtggttc |
210 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
23804662 |
acgatgtgtggttc |
23804649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 24276521 - 24276401
Alignment:
| Q |
69 |
atagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtc-ctgtcaataagctagtaaaataatcttataagtt |
167 |
Q |
| |
|
|||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||| | |
|
|
| T |
24276521 |
atagcgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaaattaatcttataacct |
24276422 |
T |
|
| Q |
168 |
tgcgagaaagaattgttacca |
188 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
24276421 |
cgttagaaagaattgttacca |
24276401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 23180167 - 23180059
Alignment:
| Q |
83 |
aaagttattaccaacatcaacaaaagttggaagtccacca---gttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaa |
179 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||| ||| ||||| || |||||||||||||||||||||||||||| | | |||||| || |
|
|
| T |
23180167 |
aaagctattaccaacatcaacaaaagttggaagtactccacgggttatcaagctttgccaataagctagtaaaataatcttataagctcgtgagaaataa |
23180068 |
T |
|
| Q |
180 |
ttgttacca |
188 |
Q |
| |
|
||||||||| |
|
|
| T |
23180067 |
ttgttacca |
23180059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 12180871 - 12180699
Alignment:
| Q |
16 |
acatcataacataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaag |
115 |
Q |
| |
|
|||||| | |||||| ||| | |||||||||| ||||||||||| ||||||||||| |||| | ||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
12180871 |
acatcaaagcataatgaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaag |
12180772 |
T |
|
| Q |
116 |
tccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
12180771 |
tccatcagttatcaagccctgtcaataagctggtaaaataatcttataagcccgtgagaaaaaattgttacca |
12180699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 11970798 - 11970984
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | ||||||| || |||||| | || ||||| ||||| |||| || ||||| |||||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
11970798 |
cataataaatcaaattttaatttctaatttctagatcttcaaaaatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagt |
11970897 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
|||||| || || |||| ||||||||||||| |||||||| || ||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
11970898 |
tgtcaaaccccatctataatctagtaaaataattttataagtatgtgagaaagaattgttaccaataagatcaacgatgtgtggttc |
11970984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 25340321 - 25340423
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
25340321 |
cataataaatcagattttaacttctaattcgtggatcttcaacaa----gggttcaccaaagttattaccaacatcaacaaaagttgaaagtccatcggt |
25340416 |
T |
|
| Q |
125 |
tgtcaag |
131 |
Q |
| |
|
||||||| |
|
|
| T |
25340417 |
tgtcaag |
25340423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 8035548 - 8035478
Alignment:
| Q |
62 |
ttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagt |
132 |
Q |
| |
|
||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8035548 |
ttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacgagttgtcaagt |
8035478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 8035746 - 8035702
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaa |
69 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
8035746 |
cataataaatcatattttaacttctaatttgtggatcttcaacaa |
8035702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 27169132 - 27168992
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||| | ||||| ||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27169132 |
cataataaatcagattttaacttctaatttgtgaatcttcaataatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagt |
27169033 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataag |
165 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27169032 |
tatcaagtcttgtcaataagctagtaaaataatcttataag |
27168992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 8785621 - 8785806
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||| ||||| ||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8785621 |
cataataaatcagatttaaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactagt |
8785720 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacc-ataaaatcaacgatctgtggttc |
210 |
Q |
| |
|
| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||| |||||||| |
|
|
| T |
8785721 |
tatcaaaccccgttaataagctagtaaaataatcttataag-caatgagaaagaattgttaccaacaagatcaacgatgtgtggttc |
8785806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 11852590 - 11852716
Alignment:
| Q |
62 |
ttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatctta |
161 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11852590 |
ttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaataagctagtaaaataatctta |
11852689 |
T |
|
| Q |
162 |
taagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||||| | ||||||||||| |||||| |
|
|
| T |
11852690 |
taagtccgtgagaaagaattattacca |
11852716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 3055318 - 3055483
Alignment:
| Q |
24 |
acataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaa-gttggaagtccacca |
122 |
Q |
| |
|
||||||| ||| | |||||||||| |||||| |||| ||||||||||| |||| |||||||| ||||| ||||||||||||| | | ||||| |||| |
|
|
| T |
3055318 |
acataattaatgagattttaacttctaatttatggatcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaattggtagaagtaaacca |
3055417 |
T |
|
| Q |
123 |
gttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||| ||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
3055418 |
gttatcaagccatgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttacca |
3055483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 23244834 - 23244744
Alignment:
| Q |
98 |
atcaacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23244834 |
atcaacaaaagttggaattccattcgttgtcaagccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttacca |
23244744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 12539412 - 12539575
Alignment:
| Q |
25 |
cataataaattatattttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagt |
124 |
Q |
| |
|
|||||||||| | |||||| ||| |||||| |||| || |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12539412 |
cataataaatcagattttatcttctaatttttggatctttaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagt |
12539511 |
T |
|
| Q |
125 |
tgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
| ||||| | || |||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
12539512 |
tatcaagccttgccaataagctagtaaaagaatcttataagcccgtgagaaagaattgttacca |
12539575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 34317791 - 34317641
Alignment:
| Q |
38 |
attttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgt |
137 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
34317791 |
attttaacttctaatttgtggatcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagctttgt |
34317692 |
T |
|
| Q |
138 |
caataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
34317691 |
caataagctagtaaaagaatcttataaatccatgagaaagaattgttacca |
34317641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 17591 - 17718
Alignment:
| Q |
38 |
attttaacttttaatttgtggaatttcaacaatagtgggtacaccaaagttattaccaacatcaacaaaagttggaagtccaccagttgtcaagtcctgt |
137 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
17591 |
attttagcttctaatttgtggatcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctgt |
17690 |
T |
|
| Q |
138 |
caataagctagtaaaataatcttataag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17691 |
caataagctagtaaaataatcttataag |
17718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 435617 - 435529
Alignment:
| Q |
100 |
caacaaaagttggaagtccaccagttgtcaagtcctgtcaataagctagtaaaataatcttataagtttgcgagaaagaattgttacca |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||| | | |||||| ||||||||||| |
|
|
| T |
435617 |
caacaaaagttcgaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttacca |
435529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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