View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_404 (Length: 227)
Name: NF8208A_low_404
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_404 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 55316124 - 55315899
Alignment:
| Q |
1 |
aaggactgaatccaccactagtgacttcaccaatgttgttgcctccttcatcttgaatctcactgtggcttctagcaggtggaccagatgaaatgaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316124 |
aaggactgaatccaccactagtgacttcaccaatgttgttgcctccttcatcttgaatctcactgtggcttctagcaggtggaccagatgaaatgaaacc |
55316025 |
T |
|
| Q |
101 |
gacacgccttatggaaggaccatctgcgagctgtttcaagataacatcagctcctagaaaaccaccttctgctcttctcctcttacctatagcccatgtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316024 |
gacacgccttatggaaggaccatctgcgagctgtttcaagataacatcagctcctagaaaaccaccttctgctcttctcctcttacctatagcccatgtc |
55315925 |
T |
|
| Q |
201 |
agtcctgcctcaattggtgtaatgtg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
55315924 |
agtcctgcctcaattggtgtaatgtg |
55315899 |
T |
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