View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_405 (Length: 227)
Name: NF8208A_low_405
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_405 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12120428 - 12120650
Alignment:
| Q |
1 |
aaataattttcgacaatttctagtcatgccnnnnnnnnnn-tcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattc |
99 |
Q |
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| T |
12120428 |
aaataattttcgacaatttctagtcatgccaaaaaaaaaaatcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattc |
12120527 |
T |
|
| Q |
100 |
tctctaacacccaatcgattaccccattaaa-ttgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaat |
198 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120528 |
tctctaacacccaaacgattaccccattaaaattgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaat |
12120627 |
T |
|
| Q |
199 |
tttaaatttagggacatcgctgg |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
12120628 |
tttaaatttagggacatcgctgg |
12120650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 16895236 - 16895281
Alignment:
| Q |
64 |
aagaggagtgctatgaacattctctttctcacattctctctaacac |
109 |
Q |
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|
| T |
16895236 |
aagagaagtgctatgaacactctttttctaacattctctctaacac |
16895281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 24886034 - 24886077
Alignment:
| Q |
66 |
gaggagtgctatgaacattctctttctcacattctctctaacac |
109 |
Q |
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| T |
24886034 |
gaggagtgctatggacattctctttctaacactctctctaacac |
24886077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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