View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_409 (Length: 226)
Name: NF8208A_low_409
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_409 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 29280091 - 29280300
Alignment:
| Q |
6 |
attttaatcatataattatttggaacacagtttaaatcatgattttaaattgtggttacgctgcaaacctttgtaccataaaaaaggcagctgatgtggt |
105 |
Q |
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| T |
29280091 |
attttaatcttataattatttggaacaaagtttaaatcatgattttaaattgtggttaggctgcaaacctttgtaccataaaaaa-gcagctgatgtggt |
29280189 |
T |
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| Q |
106 |
ctaatggttgtgataccgttgc--agacctcaaaactttttatattgcgactgcaattgcgattgctaacaatttaaacaatggttcaaaattctttgac |
203 |
Q |
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| T |
29280190 |
ctaatggttgtgataccattgcagagacctcaaaaccttttat------------attgcgattgccaacaatttaaacaatggttcaaaattctttaac |
29280277 |
T |
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| Q |
204 |
gacagttgtaaaatggccattag |
226 |
Q |
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| T |
29280278 |
gacagttgtaaaatggtcattag |
29280300 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 42945056 - 42945084
Alignment:
| Q |
45 |
tgattttaaattgtggttacgctgcaaac |
73 |
Q |
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| T |
42945056 |
tgattttaaattgtggttacgctgcaaac |
42945084 |
T |
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