View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_41 (Length: 401)
Name: NF8208A_low_41
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 384
Target Start/End: Original strand, 32472717 - 32473071
Alignment:
| Q |
30 |
gaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatctacgaaaacgagtttggattcgca |
129 |
Q |
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| T |
32472717 |
gaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatccacgaaaacgagtttggattcgca |
32472816 |
T |
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| Q |
130 |
gtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgataaggatagctccggtgaagggaacggcgaagtggagttcatacatg |
229 |
Q |
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| T |
32472817 |
gtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaaggggacggcgaagtggagttcatacatg |
32472916 |
T |
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| Q |
230 |
gcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgag |
329 |
Q |
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| T |
32472917 |
gcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgag |
32473016 |
T |
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| Q |
330 |
accatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
384 |
Q |
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| T |
32473017 |
accatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
32473071 |
T |
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