View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_416 (Length: 225)
Name: NF8208A_low_416
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_416 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 29649385 - 29649608
Alignment:
| Q |
1 |
aatttttacattttcaattaatcataaccatcaaacaattataaacgtgtgacttttaccataacaactttgaagtcacatactcacacacatgattggt |
100 |
Q |
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| T |
29649385 |
aatttttacattttcaattaatcataaccatcaaacaattataaacgtgtgacttttaccataacaactttgaagtcacatactcacacacatgattagt |
29649484 |
T |
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| Q |
101 |
tatgatgtggtgacaatgtaaattgtttgcaatgatagtgcaagaaaattaaactcaaaatatatcaaataaagagnnnnnnngtaaccataggagatat |
200 |
Q |
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| T |
29649485 |
tatgatgtggtgacaatgtaaattgtttgcaatgatagtgcaagaaaattaaactcaaaatatatcaaataaagag-aaaaaagtaaccataggagatat |
29649583 |
T |
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| Q |
201 |
taatggtcaacattaaaaagtcatg |
225 |
Q |
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| T |
29649584 |
taatggtcaacattaaaaagtcatg |
29649608 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 21570883 - 21570920
Alignment:
| Q |
84 |
tcacacacatgattggttatgatgtggtgacaatgtaa |
121 |
Q |
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| T |
21570883 |
tcacacacatgattggttgtgatgtgctgacaatgtaa |
21570920 |
T |
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