View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_421 (Length: 222)

Name: NF8208A_low_421
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_421
NF8208A_low_421
[»] chr2 (11 HSPs)
chr2 (74-155)||(7542155-7542236)
chr2 (74-155)||(12245564-12245645)
chr2 (78-152)||(14703341-14703415)
chr2 (74-155)||(11999336-11999417)
chr2 (74-155)||(12234618-12234699)
chr2 (74-155)||(12258739-12258820)
chr2 (74-155)||(16657675-16657756)
chr2 (24-71)||(7542062-7542109)
chr2 (24-71)||(12234525-12234572)
chr2 (24-71)||(14703244-14703291)
chr2 (24-71)||(16662277-16662324)
[»] chr1 (2 HSPs)
chr1 (74-123)||(52549211-52549260)
chr1 (24-71)||(52549297-52549344)
[»] chr4 (3 HSPs)
chr4 (74-146)||(35132386-35132458)
chr4 (35-71)||(30775099-30775135)
chr4 (107-155)||(54396385-54396433)
[»] chr7 (3 HSPs)
chr7 (24-71)||(8616517-8616564)
chr7 (32-71)||(8659207-8659246)
chr7 (35-71)||(8585991-8586027)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 7542155 - 7542236
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  7542155 aagaatctacctcaatagtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaa 7542236  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 12245645 - 12245564
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||| |||||||| || |||||||  || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12245645 aagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcacaagcagttctcaatctcctcaa 12245564  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 14703341 - 14703415
Alignment:
Q  78 atctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcct 152  Q
    |||||| |||||||||||||||||   |||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  14703341 atctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctcct 14703415  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 11999336 - 11999417
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||| |||||||| || |||||||  || || ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  11999336 aagaatctacctcaatagttgcaacaacaagaaatgatagtattctttttgccctctcacaagcagttctcaacctcctcaa 11999417  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 12234618 - 12234699
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||| ||||| || || ||||||| |||||| | || |||||| |||||||||||||||||||| || ||||||||    
T  12234618 aagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttcttaacctcctcaa 12234699  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 12258820 - 12258739
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||  |||||||| || |||||||   ||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  12258820 aagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaa 12258739  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 16657756 - 16657675
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    |||||||||| |||| ||||| ||||| | | ||||| ||||| || || ||||||||||| ||||||||||| ||||||||    
T  16657756 aagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaa 16657675  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 7542062 - 7542109
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  7542062 caacaatcgtcatacactcgttaaaaagatccatattcatctcctcaa 7542109  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 12234525 - 12234572
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||    
T  12234525 caacaatcttcatacactcaataagaagatccatattcatttcctcaa 12234572  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 14703244 - 14703291
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    |||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  14703244 caacaatcttcacacactcattaaaaaagtccatattcatttcttcaa 14703291  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 16662324 - 16662277
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  16662324 caacaatcttcatacactcgttaaaaaggcccatattgatttcttcaa 16662277  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 52549260 - 52549211
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549260 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 52549211  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 52549344 - 52549297
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549344 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 52549297  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 35132386 - 35132458
Alignment:
Q  74 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaa 146  Q
    ||||||||||||||||| |||| ||||||| ||||||||||| ||| || |||||||  || |||||||||||    
T  35132386 aagaatctacttcaatattggcaacaacaaggaaagaaagtgatctctttgccctctagcaggcagttctcaa 35132458  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 30775099 - 30775135
Alignment:
Q  35 atacactccttaaaaaggtccatattcatttcctcaa 71  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  30775099 atacactcattaaaaaggtccatattgatttcctcaa 30775135  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 54396385 - 54396433
Alignment:
Q  107 aagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 155  Q
    ||||||||||||| || || ||||||||||| ||||| |||||||||||    
T  54396385 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaa 54396433  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 8616517 - 8616564
Alignment:
Q  24 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    ||||| |||| |||||||| ||||||||||||||||| ||||||||||    
T  8616517 caacagtctttatacactcgttaaaaaggtccatattgatttcctcaa 8616564  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 8659207 - 8659246
Alignment:
Q  32 ttcatacactccttaaaaaggtccatattcatttcctcaa 71  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  8659207 ttcatacactcattaaaaagatccatattcatttcctcaa 8659246  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 8586027 - 8585991
Alignment:
Q  35 atacactccttaaaaaggtccatattcatttcctcaa 71  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  8586027 atacactcattaaaaaggtccatattgatttcctcaa 8585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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