View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_427 (Length: 221)
Name: NF8208A_low_427
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_427 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 21378540 - 21378359
Alignment:
| Q |
22 |
gtaacaaagacgatcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctaca |
121 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21378540 |
gtaacaaggacgagcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctaca |
21378441 |
T |
|
| Q |
122 |
acaacaaaatagttccctgttccaataaggttaccataaatagcaggtaggttaactgaagatagcttggagtgaatatagt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21378440 |
acaacaaaatagttccctgttccaataaggttaccataaatagcaggtaggttatctgaagatagcttggagtgaatatagt |
21378359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 21404995 - 21404851
Alignment:
| Q |
36 |
cacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctacaacaacaaaatagtt |
135 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| | | |||||||||| |||||||||| |||||||||||| || |
|
|
| T |
21404995 |
cacaaggttgacattgagtccaagtgagatcactaccagtgtcaaaaataagtgacaaatcctttttaggagttccaagccctaaaacaacaaaataatt |
21404896 |
T |
|
| Q |
136 |
ccctgttccaataaggttaccataaatagcaggtaggttaactga |
180 |
Q |
| |
|
||||| |||||||||| ||||| | |||| ||||||||| |||| |
|
|
| T |
21404895 |
ccctgatccaataaggctaccagatttagctggtaggttagctga |
21404851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University