View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_43 (Length: 401)
Name: NF8208A_low_43
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 42590891 - 42591004
Alignment:
| Q |
89 |
taatggcaatcatattgggtagtgagcatagtggtgataacagaattgaagaagggcattc-cctatggaatagtgtggttaaagataatttctaactgt |
187 |
Q |
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| T |
42590891 |
taatggcagtcatgttgggtagtgagcatagtggtgataacagaattgaagaagggccttctcctatggaatagtgtggttgaagataatttctaaccgt |
42590990 |
T |
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| Q |
188 |
aatacaagctggtg |
201 |
Q |
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| T |
42590991 |
aatacaagctggtg |
42591004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 42591181 - 42591288
Alignment:
| Q |
238 |
atgtttcgtgtacatcgttttaacaccattctatagacattatgctgaaatgtcgtagcatgaattgaaacggtggcttactatttgcgttgcaatgaaa |
337 |
Q |
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| T |
42591181 |
atgtttcttgtatatcgttttaacaccattacatacacagtgt--tgaaatgacctagcatgaattcaaacaatagcttactatttgtgttgaaatgaaa |
42591278 |
T |
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| Q |
338 |
ctttttctat |
347 |
Q |
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| T |
42591279 |
ctttttctat |
42591288 |
T |
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