View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_430 (Length: 220)
Name: NF8208A_low_430
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_430 |
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Alignment Details
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 30022208 - 30022146
Alignment:
| Q |
137 |
gaagcaatacaataaagagaaaaagaagaggaataccgacccagcaccaggaatcttgtcaac |
199 |
Q |
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| T |
30022208 |
gaagcaatacaataaagagaaaaagaagaagaataccgacccagcaccaggaatcttgtcaac |
30022146 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 30022326 - 30022272
Alignment:
| Q |
19 |
acaaatcctataggagctactgaaacacaaaatttccaattactgccacaaccta |
73 |
Q |
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| T |
30022326 |
acaaatcctatagaagctactgaaacacaaaatttccaattactgccacaaccta |
30022272 |
T |
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