View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_433 (Length: 220)

Name: NF8208A_low_433
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_433
NF8208A_low_433
[»] chr1 (4 HSPs)
chr1 (18-207)||(18438563-18438749)
chr1 (18-207)||(18449421-18449607)
chr1 (18-207)||(18454514-18454700)
chr1 (119-170)||(42080703-42080754)
[»] chr2 (5 HSPs)
chr2 (18-207)||(31320217-31320417)
chr2 (26-180)||(9446963-9447128)
chr2 (119-177)||(21949909-21949967)
chr2 (18-61)||(38346614-38346657)
chr2 (119-167)||(14555896-14555944)
[»] chr5 (2 HSPs)
chr5 (24-187)||(31610025-31610199)
chr5 (118-173)||(11888191-11888246)
[»] chr7 (3 HSPs)
chr7 (25-90)||(30559269-30559334)
chr7 (119-167)||(8425057-8425105)
chr7 (119-170)||(49094557-49094608)
[»] chr6 (1 HSPs)
chr6 (118-170)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (119-170)||(2048991-2049042)
chr4 (119-170)||(39735820-39735871)
chr4 (119-168)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (119-167)||(16545-16593)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18438749 - 18438563
Alignment:
Q  18 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18438749 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18438653  T
Q  118 agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18438652 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18438563  T

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Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18449607 - 18449421
Alignment:
Q  18 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18449607 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18449511  T
Q  118 agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18449510 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18449421  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18454700 - 18454514
Alignment:
Q  18 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18454700 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18454604  T
Q  118 agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18454603 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18454514  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactact 170  Q
    ||||||||||||| || ||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 31320417 - 31320217
Alignment:
Q  18 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 117  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31320417 ctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatc 31320318  T
Q  118 a-----------gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactctt 206  Q
    |           |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||    
T  31320317 acatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctcttttactctt 31320218  T
Q  207 c 207  Q
    |    
T  31320217 c 31320217  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 9447128 - 9446963
Alignment:
Q  26 ctaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------- 118  Q
    |||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           
T  9447128 ctaagatagattcagccaccatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatat 9447029  T
Q  119 ----gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgc 180  Q
        |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447028 ttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttt 177  Q
    ||||||||||||| || |||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 38346614 - 38346657
Alignment:
Q  18 ctatcccactaagatagattcagcaaccatctaaaataacagaa 61  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346614 ctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcact 167  Q
    |||||||||||||||| ||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 31610199 - 31610025
Alignment:
Q  24 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc------ 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||          
T  31610199 cactaagatagattcagcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatat 31610100  T
Q  118 -----agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 187  Q
          |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610099 atttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  118 agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactactagt 173  Q
    ||||||||||||||||| ||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 30559269 - 30559334
Alignment:
Q  25 actaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgca 90  Q
    |||||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||    
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgca 30559334  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcact 167  Q
    |||||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactact 170  Q
    ||||||||||||| || || |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  118 agattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactact 170  Q
    |||||||||||||| || |||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactact 170  Q
    ||||||||||||| || ||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcactact 170  Q
    ||||||||||||| || ||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcacta 168  Q
    ||||||||||||| || |||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  119 gattgcttttgatcacgccctttttggaacgcttttgtatgtgctcact 167  Q
    |||||||||||||||| ||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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