View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_438 (Length: 217)
Name: NF8208A_low_438
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_438 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 29222623 - 29222826
Alignment:
| Q |
21 |
tcaaacaaaaaactatgagctaaaaacgactagccaagtaagctctcaactccaaaactccattaaaacaccaagcca-------aggagatatgtaatt |
113 |
Q |
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| T |
29222623 |
tcaaacaaaaaacaacgagctaaaaatggctagccaagtaagctcccaactccaaaactttaataaa-caccaagccattttagaaggagatatgttatt |
29222721 |
T |
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| Q |
114 |
tgatcaatggtttttaaaataatttaaaggacaaccaaatacaaagaaatggttg-tacaaatataatttctcttctaaaaagatagagatagctagaac |
212 |
Q |
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| T |
29222722 |
tgatcaatcatttttaaaataatttaaaggacaactaaatacatacaaataaatgatacatatatcatttctcttctaaaaagacaaagatagctaaaac |
29222821 |
T |
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| Q |
213 |
aaact |
217 |
Q |
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||||| |
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| T |
29222822 |
aaact |
29222826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 29226702 - 29226771
Alignment:
| Q |
148 |
ccaaatacaaagaaatggttgtacaaatataatttctcttctaaaaagatagagatagctagaacaaact |
217 |
Q |
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| T |
29226702 |
ccaaatacaaagaaatggttgtacaaatatgatttctcttctaaaaagacagagatagctagaacaaact |
29226771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 305018 - 305052
Alignment:
| Q |
160 |
aaatggttgtacaaatataatttctcttctaaaaa |
194 |
Q |
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| T |
305018 |
aaatggttgtacaaatataatttctcttctcaaaa |
305052 |
T |
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